--- /dev/null
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+<h1 class="bar">All Classes</h1>
+<div class="indexContainer">
+<ul>
+<li><a href="edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection" target="classFrame">AbstractClusterMatcher</a></li>
+<li><a href="edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection" target="classFrame">AbstractSignatureDetector</a></li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment" target="classFrame">AlignmentPricer</a></li>
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+<li><a href="edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3" target="classFrame">Conversation</a></li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3" target="classFrame">Conversation.Direction</a></li>
+<li><a href="edu/uci/iotproject/evaluation/DetectionResultsAnalyzer.html" title="class in edu.uci.iotproject.evaluation" target="classFrame">DetectionResultsAnalyzer</a></li>
+<li><a href="edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject" target="classFrame">DnsMap</a></li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment" target="classFrame">ExtractedSequence</a></li>
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+<li><a href="edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2" target="classFrame">Layer2FlowReassembler</a></li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2" target="classFrame"><span class="interfaceName">Layer2FlowReassemblerObserver</span></a></li>
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+<li><a href="edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2" target="classFrame">Layer2SequenceMatcher</a></li>
+<li><a href="edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2" target="classFrame">Layer2SignatureDetector</a></li>
+<li><a href="edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3" target="classFrame">Layer3ClusterMatcher</a></li>
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+<li><a href="edu/uci/iotproject/io/PrintWriterUtils.html" title="class in edu.uci.iotproject.io" target="classFrame">PrintWriterUtils</a></li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment" target="classFrame">SampleIntegerAlignmentPricer</a></li>
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+<li><a href="edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment" target="classFrame">SequenceAlignment</a></li>
+<li><a href="edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test" target="classFrame">SequenceAlignmentTest</a></li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment" target="classFrame">SequenceExtraction</a></li>
+<li><a href="edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection" target="classFrame"><span class="interfaceName">SignatureDetectorObserver</span></a></li>
+<li><a href="edu/uci/iotproject/SignatureGenerator.html" title="class in edu.uci.iotproject" target="classFrame">SignatureGenerator</a></li>
+<li><a href="edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis" target="classFrame">TcpConversationUtils</a></li>
+<li><a href="edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis" target="classFrame">TcpConversationUtils.SignaturePosition</a></li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer3" target="classFrame">TcpReassembler</a></li>
+<li><a href="edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis" target="classFrame">TrafficLabeler</a></li>
+<li><a href="edu/uci/iotproject/io/TriggerTimesFileReader.html" title="class in edu.uci.iotproject.io" target="classFrame">TriggerTimesFileReader</a></li>
+<li><a href="edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis" target="classFrame">TriggerTrafficExtractor</a></li>
+<li><a href="edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis" target="classFrame">UserAction</a></li>
+<li><a href="edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis" target="classFrame">UserAction.Type</a></li>
+</ul>
+</div>
+</body>
+</html>
--- /dev/null
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+<div class="indexContainer">
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+<li><a href="edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection">AbstractSignatureDetector</a></li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a></li>
+<li><a href="edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection"><span class="interfaceName">ClusterMatcherObserver</span></a></li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a></li>
+<li><a href="edu/uci/iotproject/evaluation/DetectionResultsAnalyzer.html" title="class in edu.uci.iotproject.evaluation">DetectionResultsAnalyzer</a></li>
+<li><a href="edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a></li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment">ExtractedSequence</a></li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">FinAckPair</a></li>
+<li><a href="edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></li>
+<li><a href="edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></li>
+<li><a href="edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2ClusterMatcher</a></li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></li>
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+<li><a href="edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></li>
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+<li><a href="edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPattern</a></li>
+<li><a href="edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPatternFinder</a></li>
+<li><a href="edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io">PcapHandleReader</a></li>
+<li><a href="edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis"><span class="interfaceName">PcapPacketFilter</span></a></li>
+<li><a href="edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></li>
+<li><a href="edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></li>
+<li><a href="edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util">PrintUtils</a></li>
+<li><a href="edu/uci/iotproject/io/PrintWriterUtils.html" title="class in edu.uci.iotproject.io">PrintWriterUtils</a></li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">SampleIntegerAlignmentPricer</a></li>
+<li><a href="edu/uci/iotproject/evaluation/SanitySignatureGenerator.html" title="class in edu.uci.iotproject.evaluation">SanitySignatureGenerator</a></li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceAlignment</a></li>
+<li><a href="edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceExtraction</a></li>
+<li><a href="edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection"><span class="interfaceName">SignatureDetectorObserver</span></a></li>
+<li><a href="edu/uci/iotproject/SignatureGenerator.html" title="class in edu.uci.iotproject">SignatureGenerator</a></li>
+<li><a href="edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></li>
+<li><a href="edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis">TcpConversationUtils.SignaturePosition</a></li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">TcpReassembler</a></li>
+<li><a href="edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis">TrafficLabeler</a></li>
+<li><a href="edu/uci/iotproject/io/TriggerTimesFileReader.html" title="class in edu.uci.iotproject.io">TriggerTimesFileReader</a></li>
+<li><a href="edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis">TriggerTrafficExtractor</a></li>
+<li><a href="edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></li>
+<li><a href="edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a></li>
+</ul>
+</div>
+</body>
+</html>
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+<title>Constant Field Values</title>
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+<h1 title="Constant Field Values" class="title">Constant Field Values</h1>
+<h2 title="Contents">Contents</h2>
+<ul>
+<li><a href="#edu.uci">edu.uci.*</a></li>
+</ul>
+</div>
+<div class="constantValuesContainer"><a name="edu.uci">
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+<ul class="blockList">
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+<table class="constantsSummary" border="0" cellpadding="3" cellspacing="0" summary="Constant Field Values table, listing constant fields, and values">
+<caption><span>edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis">TriggerTrafficExtractor</a></span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th scope="col">Constant Field</th>
+<th class="colLast" scope="col">Value</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a name="edu.uci.iotproject.analysis.TriggerTrafficExtractor.INCLUSION_WINDOW_MILLIS">
+<!-- -->
+</a><code>public static final int</code></td>
+<td><code><a href="edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#INCLUSION_WINDOW_MILLIS">INCLUSION_WINDOW_MILLIS</a></code></td>
+<td class="colLast"><code>15000</code></td>
+</tr>
+</tbody>
+</table>
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+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>DnsMap</title>
+<meta name="date" content="2019-03-28">
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+var methods = {"i0":10,"i1":10,"i2":10,"i3":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
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+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject</div>
+<h2 title="Class DnsMap" class="title">Class DnsMap</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.DnsMap</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
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+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd>org.pcap4j.core.PacketListener</dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">DnsMap</span>
+extends java.lang.Object
+implements org.pcap4j.core.PacketListener</pre>
+<div class="block">This is a class that does DNS mapping.
+ Basically an IP address is mapped to its
+ respective DNS hostnames.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
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+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/DnsMap.html#DnsMap--">DnsMap</a></span>()</code> </td>
+</tr>
+</table>
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+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>java.util.Set<java.lang.String></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/DnsMap.html#getHostnamesForIp-java.lang.String-">getHostnamesForIp</a></span>(java.lang.String ip)</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/DnsMap.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/DnsMap.html#isRelatedToCloudServer-java.lang.String-java.lang.String-">isRelatedToCloudServer</a></span>(java.lang.String address,
+ java.lang.String hostname)</code>
+<div class="block">Checks DNS packet and build the map data structure that
+ maps IP addresses to DNS hostnames</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/DnsMap.html#validateAndAddNewEntry-org.pcap4j.core.PcapPacket-">validateAndAddNewEntry</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Checks DNS packet and build the map data structure that
+ maps IP addresses to DNS hostnames</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
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+<li class="blockList"><a name="constructor.detail">
+<!-- -->
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+<h3>Constructor Detail</h3>
+<a name="DnsMap--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>DnsMap</h4>
+<pre>public DnsMap()</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
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+<a name="gotPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
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+<ul class="blockList">
+<li class="blockList">
+<h4>gotPacket</h4>
+<pre>public void gotPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code>gotPacket</code> in interface <code>org.pcap4j.core.PacketListener</code></dd>
+</dl>
+</li>
+</ul>
+<a name="validateAndAddNewEntry-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>validateAndAddNewEntry</h4>
+<pre>public void validateAndAddNewEntry(org.pcap4j.core.PcapPacket packet)
+ throws java.net.UnknownHostException</pre>
+<div class="block">Checks DNS packet and build the map data structure that
+ maps IP addresses to DNS hostnames</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - PcapPacket object</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.net.UnknownHostException</code></dd>
+</dl>
+</li>
+</ul>
+<a name="isRelatedToCloudServer-java.lang.String-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isRelatedToCloudServer</h4>
+<pre>public boolean isRelatedToCloudServer(java.lang.String address,
+ java.lang.String hostname)</pre>
+<div class="block">Checks DNS packet and build the map data structure that
+ maps IP addresses to DNS hostnames</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>address</code> - Address to check</dd>
+<dd><code>hostname</code> - Hostname to check</dd>
+</dl>
+</li>
+</ul>
+<a name="getHostnamesForIp-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>getHostnamesForIp</h4>
+<pre>public java.util.Set<java.lang.String> getHostnamesForIp(java.lang.String ip)</pre>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
+<title>FlowPattern</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../script.js"></script>
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+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="FlowPattern";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
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+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
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+<!-- -->
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+</div>
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+<ul class="navList">
+<li><a href="../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><span class="typeNameLink">Prev Class</span></a></li>
+<li><a href="../../../edu/uci/iotproject/SignatureGenerator.html" title="class in edu.uci.iotproject"><span class="typeNameLink">Next Class</span></a></li>
+</ul>
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+<li>Summary: </li>
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+<li><a href="#method.summary">Method</a></li>
+</ul>
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+<li>Detail: </li>
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+</ul>
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+<a name="skip.navbar.top">
+<!-- -->
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject</div>
+<h2 title="Class FlowPattern" class="title">Class FlowPattern</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.FlowPattern</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">FlowPattern</span>
+extends java.lang.Object</pre>
+<div class="block">TODO add class documentation.
+ TODO: At this point, this class is still in transition to having multiple hostnames and lists of packets</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
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+<li class="blockList"><a name="constructor.summary">
+<!-- -->
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+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/FlowPattern.html#FlowPattern-java.lang.String-java.util.List-org.pcap4j.core.PcapHandle-">FlowPattern</a></span>(java.lang.String mPatternId,
+ java.util.List<java.lang.String> mHostnameList,
+ org.pcap4j.core.PcapHandle mPcap)</code>
+<div class="block">Constructor #2</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/FlowPattern.html#FlowPattern-java.lang.String-java.lang.String-org.pcap4j.core.PcapHandle-">FlowPattern</a></span>(java.lang.String mPatternId,
+ java.lang.String hostname,
+ org.pcap4j.core.PcapHandle mPcap)</code>
+<div class="block">Constructor #1</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
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+<!-- -->
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+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/FlowPattern.html#getHostname--">getHostname</a></span>()</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>java.util.List<java.lang.String></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/FlowPattern.html#getHostnameList--">getHostnameList</a></span>()</code>
+<div class="block">Get the list of associated hostnames.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/FlowPattern.html#getLength--">getLength</a></span>()</code>
+<div class="block">Get the length of the List of <code>FlowPattern</code>.</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/FlowPattern.html#getLength-java.lang.String-">getLength</a></span>(java.lang.String hostname)</code>
+<div class="block">Get the length of the List of <code>FlowPattern</code>.</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>java.util.List<java.lang.Integer></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/FlowPattern.html#getPacketOrder--">getPacketOrder</a></span>()</code>
+<div class="block">Get the sequence of packet lengths that defines this <code>FlowPattern</code>.</div>
+</td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>java.util.List<java.lang.Integer></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/FlowPattern.html#getPacketOrder-java.lang.String-">getPacketOrder</a></span>(java.lang.String hostname)</code>
+<div class="block">Get the sequence of packet lengths based on input hostname.</div>
+</td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/FlowPattern.html#getPatternId--">getPatternId</a></span>()</code> </td>
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+<h3>Methods inherited from class java.lang.Object</h3>
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+</ul>
+</li>
+</ul>
+</li>
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+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="FlowPattern-java.lang.String-java.lang.String-org.pcap4j.core.PcapHandle-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>FlowPattern</h4>
+<pre>public FlowPattern(java.lang.String mPatternId,
+ java.lang.String hostname,
+ org.pcap4j.core.PcapHandle mPcap)</pre>
+<div class="block">Constructor #1</div>
+</li>
+</ul>
+<a name="FlowPattern-java.lang.String-java.util.List-org.pcap4j.core.PcapHandle-">
+<!-- -->
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+<h4>FlowPattern</h4>
+<pre>public FlowPattern(java.lang.String mPatternId,
+ java.util.List<java.lang.String> mHostnameList,
+ org.pcap4j.core.PcapHandle mPcap)</pre>
+<div class="block">Constructor #2</div>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
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+<li class="blockList"><a name="method.detail">
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+<li class="blockList">
+<h4>getPatternId</h4>
+<pre>public java.lang.String getPatternId()</pre>
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+<h4>getHostname</h4>
+<pre>public java.lang.String getHostname()</pre>
+</li>
+</ul>
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+<li class="blockList">
+<h4>getPacketOrder</h4>
+<pre>public java.util.List<java.lang.Integer> getPacketOrder()</pre>
+<div class="block">Get the sequence of packet lengths that defines this <code>FlowPattern</code>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the sequence of packet lengths that defines this <code>FlowPattern</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getPacketOrder-java.lang.String-">
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+<li class="blockList">
+<h4>getPacketOrder</h4>
+<pre>public java.util.List<java.lang.Integer> getPacketOrder(java.lang.String hostname)</pre>
+<div class="block">Get the sequence of packet lengths based on input hostname.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the sequence of packet lengths that defines this <code>FlowPattern</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getHostnameList--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getHostnameList</h4>
+<pre>public java.util.List<java.lang.String> getHostnameList()</pre>
+<div class="block">Get the list of associated hostnames.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the associated hostnames that define this <code>FlowPattern</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getLength--">
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+<li class="blockList">
+<h4>getLength</h4>
+<pre>public int getLength()</pre>
+<div class="block">Get the length of the List of <code>FlowPattern</code>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the length of the List of <code>FlowPattern</code>.</dd>
+</dl>
+</li>
+</ul>
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+<li class="blockList">
+<h4>getLength</h4>
+<pre>public int getLength(java.lang.String hostname)</pre>
+<div class="block">Get the length of the List of <code>FlowPattern</code>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the length of the List of <code>FlowPattern</code>.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
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+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="SignatureGenerator";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":9};
+var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
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+<li>Next Class</li>
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+<li><a href="SignatureGenerator.html" target="_top">No Frames</a></li>
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+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
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+<li>Detail: </li>
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+<!-- -->
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject</div>
+<h2 title="Class SignatureGenerator" class="title">Class SignatureGenerator</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.SignatureGenerator</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">SignatureGenerator</span>
+extends java.lang.Object</pre>
+<div class="block">This is a system that reads PCAP files to compare
+ patterns of DNS hostnames, packet sequences, and packet
+ lengths with training data to determine certain events
+ or actions for smart home devices.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/SignatureGenerator.html#SignatureGenerator--">SignatureGenerator</a></span>()</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../edu/uci/iotproject/SignatureGenerator.html#main-java.lang.String:A-">main</a></span>(java.lang.String[] args)</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
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+<!-- -->
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+<h3>Constructor Detail</h3>
+<a name="SignatureGenerator--">
+<!-- -->
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+<li class="blockList">
+<h4>SignatureGenerator</h4>
+<pre>public SignatureGenerator()</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
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+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>main</h4>
+<pre>public static void main(java.lang.String[] args)
+ throws org.pcap4j.core.PcapNativeException,
+ org.pcap4j.core.NotOpenException,
+ java.io.EOFException,
+ java.util.concurrent.TimeoutException,
+ java.net.UnknownHostException,
+ java.io.IOException</pre>
+<dl>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code></dd>
+<dd><code>org.pcap4j.core.NotOpenException</code></dd>
+<dd><code>java.io.EOFException</code></dd>
+<dd><code>java.util.concurrent.TimeoutException</code></dd>
+<dd><code>java.net.UnknownHostException</code></dd>
+<dd><code>java.io.IOException</code></dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<!-- NewPage -->
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+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>PcapPacketFilter</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
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+<script type="text/javascript"><!--
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+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="PcapPacketFilter";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":6};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
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+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
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+<ul class="navList" title="Navigation">
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+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.analysis</div>
+<h2 title="Interface PcapPacketFilter" class="title">Interface PcapPacketFilter</h2>
+</div>
+<div class="contentContainer">
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Known Implementing Classes:</dt>
+<dd><a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis">TriggerTrafficExtractor</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public interface <span class="typeNameLabel">PcapPacketFilter</span></pre>
+<div class="block">TODO add class documentation.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========== METHOD SUMMARY =========== -->
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+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html#shouldIncludePacket-org.pcap4j.core.PcapPacket-">shouldIncludePacket</a></span>(org.pcap4j.core.PcapPacket packet)</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
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+<a name="shouldIncludePacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>shouldIncludePacket</h4>
+<pre>boolean shouldIncludePacket(org.pcap4j.core.PcapPacket packet)</pre>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>PcapPacketPair</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
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+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="PcapPacketPair";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
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+<div class="subNav">
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+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.analysis</div>
+<h2 title="Class PcapPacketPair" class="title">Class PcapPacketPair</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.analysis.PcapPacketPair</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd>org.apache.commons.math3.stat.clustering.Clusterable<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>></dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">PcapPacketPair</span>
+extends java.lang.Object
+implements org.apache.commons.math3.stat.clustering.Clusterable<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>></pre>
+<div class="block"><p>
+ A simple wrapper for holding a pair of packets (e.g., a request and associated reply packet).
+ </p>
+
+ <b>Note:</b> we use the deprecated version</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#PcapPacketPair-org.pcap4j.core.PcapPacket-org.pcap4j.core.PcapPacket-">PcapPacketPair</a></span>(org.pcap4j.core.PcapPacket first,
+ org.pcap4j.core.PcapPacket second)</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#centroidOf-java.util.Collection-">centroidOf</a></span>(java.util.Collection<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> p)</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>double</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#distanceFrom-edu.uci.iotproject.analysis.PcapPacketPair-">distanceFrom</a></span>(<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a> that)</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code><a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#getDnsMap--">getDnsMap</a></span>()</code>
+<div class="block">Get the <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><code>DnsMap</code></a> that is queried for hostnames mappings when performing IP/hostname-sensitive clustering.</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>org.pcap4j.core.PcapPacket</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#getFirst--">getFirst</a></span>()</code> </td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>java.util.Optional<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#getSecond--">getSecond</a></span>()</code> </td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#isFirstClient--">isFirstClient</a></span>()</code> </td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#isSecondClient--">isSecondClient</a></span>()</code> </td>
+</tr>
+<tr id="i7" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#setDnsMap-edu.uci.iotproject.DnsMap-">setDnsMap</a></span>(<a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> dnsMap)</code>
+<div class="block">Set the <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><code>DnsMap</code></a> to be queried for hostnames mappings when performing IP/hostname-sensitive clustering.</div>
+</td>
+</tr>
+<tr id="i8" class="altColor">
+<td class="colFirst"><code>java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#toString--">toString</a></span>()</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="PcapPacketPair-org.pcap4j.core.PcapPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>PcapPacketPair</h4>
+<pre>public PcapPacketPair(org.pcap4j.core.PcapPacket first,
+ org.pcap4j.core.PcapPacket second)</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="getFirst--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getFirst</h4>
+<pre>public org.pcap4j.core.PcapPacket getFirst()</pre>
+</li>
+</ul>
+<a name="isFirstClient--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isFirstClient</h4>
+<pre>public boolean isFirstClient()</pre>
+</li>
+</ul>
+<a name="getSecond--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getSecond</h4>
+<pre>public java.util.Optional<org.pcap4j.core.PcapPacket> getSecond()</pre>
+</li>
+</ul>
+<a name="isSecondClient--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isSecondClient</h4>
+<pre>public boolean isSecondClient()</pre>
+</li>
+</ul>
+<a name="getDnsMap--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getDnsMap</h4>
+<pre>public <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> getDnsMap()</pre>
+<div class="block">Get the <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><code>DnsMap</code></a> that is queried for hostnames mappings when performing IP/hostname-sensitive clustering.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><code>DnsMap</code></a> that is queried for hostnames mappings when performing IP/hostname-sensitive clustering.</dd>
+</dl>
+</li>
+</ul>
+<a name="setDnsMap-edu.uci.iotproject.DnsMap-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setDnsMap</h4>
+<pre>public void setDnsMap(<a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> dnsMap)</pre>
+<div class="block">Set the <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><code>DnsMap</code></a> to be queried for hostnames mappings when performing IP/hostname-sensitive clustering.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>dnsMap</code> - a <code>DnsMap</code> to be queried for hostnames mappings when performing IP/hostname-sensitive clustering.</dd>
+</dl>
+</li>
+</ul>
+<a name="toString--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>toString</h4>
+<pre>public java.lang.String toString()</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
+<dd><code>toString</code> in class <code>java.lang.Object</code></dd>
+</dl>
+</li>
+</ul>
+<a name="distanceFrom-edu.uci.iotproject.analysis.PcapPacketPair-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>distanceFrom</h4>
+<pre>public double distanceFrom(<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a> that)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code>distanceFrom</code> in interface <code>org.apache.commons.math3.stat.clustering.Clusterable<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>></code></dd>
+</dl>
+</li>
+</ul>
+<a name="centroidOf-java.util.Collection-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>centroidOf</h4>
+<pre>public <a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a> centroidOf(java.util.Collection<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> p)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code>centroidOf</code> in interface <code>org.apache.commons.math3.stat.clustering.Clusterable<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>></code></dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
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+<div class="subTitle">edu.uci.iotproject.analysis</div>
+<h2 title="Enum TcpConversationUtils.SignaturePosition" class="title">Enum TcpConversationUtils.SignaturePosition</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>java.lang.Enum<<a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis">TcpConversationUtils.SignaturePosition</a>></li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.analysis.TcpConversationUtils.SignaturePosition</li>
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+<div class="description">
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+<dl>
+<dt>Enclosing class:</dt>
+<dd><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public static enum <span class="typeNameLabel">TcpConversationUtils.SignaturePosition</span>
+extends java.lang.Enum<<a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis">TcpConversationUtils.SignaturePosition</a>></pre>
+<div class="block">Identifies the adjacency type of the signature for merging.</div>
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+<tr class="altColor">
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+</tr>
+<tr class="rowColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html#NOT_ADJACENT">NOT_ADJACENT</a></span></code> </td>
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+<div class="block">Returns an array containing the constants of this enum type, in
+the order they are declared. This method may be used to iterate
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+for (TcpConversationUtils.SignaturePosition c : TcpConversationUtils.SignaturePosition.values())
+ System.out.println(c);
+</pre></div>
+<dl>
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+<div class="block">Returns the enum constant of this type with the specified name.
+The string must match <i>exactly</i> an identifier used to declare an
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+<dd><code>java.lang.NullPointerException</code> - if the argument is null</dd>
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+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.analysis</div>
+<h2 title="Class TcpConversationUtils" class="title">Class TcpConversationUtils</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.analysis.TcpConversationUtils</li>
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+</li>
+</ul>
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+<br>
+<pre>public class <span class="typeNameLabel">TcpConversationUtils</span>
+extends java.lang.Object</pre>
+<div class="block">Utility functions for analyzing and structuring (sets of) <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s.</div>
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+<caption><span>Nested Classes</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Class and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><code>static class </code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis">TcpConversationUtils.SignaturePosition</a></span></code>
+<div class="block">Identifies the adjacency type of the signature for merging.</div>
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+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#TcpConversationUtils--">TcpConversationUtils</a></span>()</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>static java.util.Map<java.lang.Integer,java.lang.Integer></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketLengthFrequencies-java.util.Collection-">countPacketLengthFrequencies</a></span>(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</code>
+<div class="block">Like <a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketLengthFrequencies-edu.uci.iotproject.trafficreassembly.layer3.Conversation-"><code>countPacketLengthFrequencies(Conversation)</code></a>, but counts packet length frequencies for a collection
+ of <code>Conversation</code>s, i.e., the frequency of a packet length becomes the total number of packets with that
+ length across <em>all</em> <code>Conversation</code>s in <code>conversations</code>.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>static java.util.Map<java.lang.Integer,java.lang.Integer></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketLengthFrequencies-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">countPacketLengthFrequencies</a></span>(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> c)</code>
+<div class="block">Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, counts the frequencies of each unique packet length seen as part of the
+ <code>Conversation</code>.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>static java.util.Map<java.lang.String,java.lang.Integer></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketPairFrequencies-java.util.Collection-">countPacketPairFrequencies</a></span>(java.util.Collection<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> pairs)</code> </td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Integer>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketPairFrequenciesByHostname-java.util.Collection-edu.uci.iotproject.DnsMap-">countPacketPairFrequenciesByHostname</a></span>(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> tcpConversations,
+ <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> ipHostnameMappings)</code> </td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>static java.util.Map<java.lang.String,java.lang.Integer></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketSequenceFrequencies-java.util.Collection-">countPacketSequenceFrequencies</a></span>(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</code> </td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>static java.util.List<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#extractPacketPairs-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">extractPacketPairs</a></span>(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> conv)</code>
+<div class="block">
+ Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its set of "packet pairs", i.e., pairs of request-reply packets.</div>
+</td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>static java.util.List<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#extractTlsAppDataPacketPairs-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">extractTlsAppDataPacketPairs</a></span>(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> conv)</code>
+<div class="block">
+ Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its set of "packet pairs", i.e., pairs of request-reply packets.</div>
+</td>
+</tr>
+<tr id="i7" class="rowColor">
+<td class="colFirst"><code>static java.lang.Integer[]</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#getPacketLengthSequence-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">getPacketLengthSequence</a></span>(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> c)</code>
+<div class="block">Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its packet length sequence.</div>
+</td>
+</tr>
+<tr id="i8" class="altColor">
+<td class="colFirst"><code>static java.lang.Integer[]</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#getPacketLengthSequenceTlsAppDataOnly-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">getPacketLengthSequenceTlsAppDataOnly</a></span>(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> c)</code>
+<div class="block">Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its packet length sequence, but only include packet lengths of those
+ packets that carry TLS Application Data.</div>
+</td>
+</tr>
+<tr id="i9" class="rowColor">
+<td class="colFirst"><code>static java.util.Map<java.lang.String,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#groupConversationsByHostname-java.util.Collection-edu.uci.iotproject.DnsMap-">groupConversationsByHostname</a></span>(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> tcpConversations,
+ <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> ipHostnameMappings)</code>
+<div class="block">Given a collection of TCP conversations and associated DNS mappings, groups the conversations by hostname.</div>
+</td>
+</tr>
+<tr id="i10" class="altColor">
+<td class="colFirst"><code>static java.util.Map<java.lang.String,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#groupConversationsByPacketSequence-java.util.Collection-boolean-">groupConversationsByPacketSequence</a></span>(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations,
+ boolean verbose)</code>
+<div class="block">Given a <code>Collection</code> of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s, builds a <code>Map</code> from <code>String</code> to <code>List</code>
+ of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s such that each key is the <em>concatenation of the packet lengths of all payload packets
+ (i.e., the set of packets returned by <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getPackets--"><code>Conversation.getPackets()</code></a>) separated by a delimiter</em> of any
+ <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> pointed to by that key.</div>
+</td>
+</tr>
+<tr id="i11" class="rowColor">
+<td class="colFirst"><code>static java.util.Map<java.lang.String,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#groupConversationsByTlsApplicationDataPacketSequence-java.util.Collection-">groupConversationsByTlsApplicationDataPacketSequence</a></span>(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</code> </td>
+</tr>
+<tr id="i12" class="altColor">
+<td class="colFirst"><code>static <a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis">TcpConversationUtils.SignaturePosition</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#isPartOfConversationAndAdjacent-java.util.List-java.util.List-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">isPartOfConversationAndAdjacent</a></span>(java.util.List<org.pcap4j.core.PcapPacket> ppListFirst,
+ java.util.List<org.pcap4j.core.PcapPacket> ppListSecond,
+ <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> conversation)</code>
+<div class="block">Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects, check if <code>List</code> of <code>PcapPacket</code> is part of it and return the
+ adjacency label based on <code>SignaturePosition</code>.</div>
+</td>
+</tr>
+<tr id="i13" class="rowColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#isTlsPort-int-">isTlsPort</a></span>(int port)</code>
+<div class="block">Check if a given port number is considered a TLS port.</div>
+</td>
+</tr>
+<tr id="i14" class="altColor">
+<td class="colFirst"><code>static <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#returnConversation-java.util.List-java.util.List-">returnConversation</a></span>(java.util.List<org.pcap4j.core.PcapPacket> ppList,
+ java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</code>
+<div class="block">Given a <code>List</code> of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects, find one that has the given <code>List</code>
+ of <code>PcapPacket</code>.</div>
+</td>
+</tr>
+<tr id="i15" class="rowColor">
+<td class="colFirst"><code>static java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#sortConversationList-java.util.List-">sortConversationList</a></span>(java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</code>
+<div class="block">Given a list of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects, sort them by timestamps.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="TcpConversationUtils--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>TcpConversationUtils</h4>
+<pre>public TcpConversationUtils()</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="extractPacketPairs-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>extractPacketPairs</h4>
+<pre>public static java.util.List<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> extractPacketPairs(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> conv)</pre>
+<div class="block"><p>
+ Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its set of "packet pairs", i.e., pairs of request-reply packets.
+ <em>The extracted pairs are formed from the full set of payload-carrying TCP packets.</em>
+ </p>
+
+ <b>Note:</b> in the current implementation, if one endpoint sends multiple packets back-to-back with no
+ interleaved reply packets from the other endpoint, such packets are converted to one-item pairs (i.e., instances
+ of <a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis"><code>PcapPacketPair</code></a> where <a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#getSecond--"><code>PcapPacketPair.getSecond()</code></a> is <code>null</code>).</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>conv</code> - The <code>Conversation</code> for which packet pairs are to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The packet pairs extracted from <code>conv</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="extractTlsAppDataPacketPairs-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>extractTlsAppDataPacketPairs</h4>
+<pre>public static java.util.List<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> extractTlsAppDataPacketPairs(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> conv)</pre>
+<div class="block"><p>
+ Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its set of "packet pairs", i.e., pairs of request-reply packets.
+ <em>The extracted pairs are formed from the full set of TLS Application Data packets.</em>
+ </p>
+
+ <b>Note:</b> in the current implementation, if one endpoint sends multiple packets back-to-back with no
+ interleaved reply packets from the other endpoint, such packets are converted to one-item pairs (i.e., instances
+ of <a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis"><code>PcapPacketPair</code></a> where <a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html#getSecond--"><code>PcapPacketPair.getSecond()</code></a> is <code>null</code>).</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>conv</code> - The <code>Conversation</code> for which packet pairs are to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The packet pairs extracted from <code>conv</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="groupConversationsByHostname-java.util.Collection-edu.uci.iotproject.DnsMap-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>groupConversationsByHostname</h4>
+<pre>public static java.util.Map<java.lang.String,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>> groupConversationsByHostname(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> tcpConversations,
+ <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> ipHostnameMappings)</pre>
+<div class="block">Given a collection of TCP conversations and associated DNS mappings, groups the conversations by hostname.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>tcpConversations</code> - The collection of TCP conversations.</dd>
+<dd><code>ipHostnameMappings</code> - The associated DNS mappings.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A map where each key is a hostname and its associated value is a list of conversations where one of the
+ two communicating hosts is that hostname (i.e. its IP maps to the hostname).</dd>
+</dl>
+</li>
+</ul>
+<a name="countPacketSequenceFrequencies-java.util.Collection-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>countPacketSequenceFrequencies</h4>
+<pre>public static java.util.Map<java.lang.String,java.lang.Integer> countPacketSequenceFrequencies(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</pre>
+</li>
+</ul>
+<a name="groupConversationsByPacketSequence-java.util.Collection-boolean-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>groupConversationsByPacketSequence</h4>
+<pre>public static java.util.Map<java.lang.String,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>> groupConversationsByPacketSequence(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations,
+ boolean verbose)</pre>
+<div class="block">Given a <code>Collection</code> of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s, builds a <code>Map</code> from <code>String</code> to <code>List</code>
+ of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s such that each key is the <em>concatenation of the packet lengths of all payload packets
+ (i.e., the set of packets returned by <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getPackets--"><code>Conversation.getPackets()</code></a>) separated by a delimiter</em> of any
+ <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> pointed to by that key. In other words, what the <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s <code>cs</code> pointed to
+ by the key <code>s</code> have in common is that they all contain exactly the same number of payload packets <em>and
+ </em> these payload packets are identical across all <code>Conversation</code>s in <code>cs</code> in terms of packet
+ length and packet order. For example, if the key is "152 440 550", this means that every individual
+ <code>Conversation</code> in the list of <code>Conversation</code>s pointed to by that key contain exactly three payload
+ packet of lengths 152, 440, and 550, and these three packets are ordered in the order prescribed by the key.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>conversations</code> - The collection of <code>Conversation</code>s to group by packet sequence.</dd>
+<dd><code>verbose</code> - If set to <code>true</code>, the grouping (and therefore the key) will also include SYN/SYNACK,
+ FIN/FINACK, RST packets, and each payload-carrying packet will have an indication of the direction
+ of the packet prepended.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a <code>Map</code> from <code>String</code> to <code>List</code> of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s such that each key is the
+ <em>concatenation of the packet lengths of all payload packets (i.e., the set of packets returned by
+ <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getPackets--"><code>Conversation.getPackets()</code></a>) separated by a delimiter</em> of any <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> pointed to
+ by that key.</dd>
+</dl>
+</li>
+</ul>
+<a name="groupConversationsByTlsApplicationDataPacketSequence-java.util.Collection-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>groupConversationsByTlsApplicationDataPacketSequence</h4>
+<pre>public static java.util.Map<java.lang.String,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>> groupConversationsByTlsApplicationDataPacketSequence(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</pre>
+</li>
+</ul>
+<a name="countPacketLengthFrequencies-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>countPacketLengthFrequencies</h4>
+<pre>public static java.util.Map<java.lang.Integer,java.lang.Integer> countPacketLengthFrequencies(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> c)</pre>
+<div class="block">Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, counts the frequencies of each unique packet length seen as part of the
+ <code>Conversation</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>c</code> - The <code>Conversation</code> for which unique packet length frequencies are to be determined.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A mapping from packet length to its frequency.</dd>
+</dl>
+</li>
+</ul>
+<a name="countPacketLengthFrequencies-java.util.Collection-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>countPacketLengthFrequencies</h4>
+<pre>public static java.util.Map<java.lang.Integer,java.lang.Integer> countPacketLengthFrequencies(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</pre>
+<div class="block">Like <a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketLengthFrequencies-edu.uci.iotproject.trafficreassembly.layer3.Conversation-"><code>countPacketLengthFrequencies(Conversation)</code></a>, but counts packet length frequencies for a collection
+ of <code>Conversation</code>s, i.e., the frequency of a packet length becomes the total number of packets with that
+ length across <em>all</em> <code>Conversation</code>s in <code>conversations</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>conversations</code> - The collection of <code>Conversation</code>s for which packet length frequencies are to be
+ counted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A mapping from packet length to its frequency.</dd>
+</dl>
+</li>
+</ul>
+<a name="countPacketPairFrequencies-java.util.Collection-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>countPacketPairFrequencies</h4>
+<pre>public static java.util.Map<java.lang.String,java.lang.Integer> countPacketPairFrequencies(java.util.Collection<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> pairs)</pre>
+</li>
+</ul>
+<a name="countPacketPairFrequenciesByHostname-java.util.Collection-edu.uci.iotproject.DnsMap-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>countPacketPairFrequenciesByHostname</h4>
+<pre>public static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Integer>> countPacketPairFrequenciesByHostname(java.util.Collection<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> tcpConversations,
+ <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> ipHostnameMappings)</pre>
+</li>
+</ul>
+<a name="getPacketLengthSequence-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getPacketLengthSequence</h4>
+<pre>public static java.lang.Integer[] getPacketLengthSequence(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> c)</pre>
+<div class="block">Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its packet length sequence.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>c</code> - The <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> from which a packet length sequence is to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>An <code>Integer[]</code> that holds the packet lengths of all payload-carrying packets in <code>c</code>. The
+ packet lengths in the returned array are ordered by packet timestamp.</dd>
+</dl>
+</li>
+</ul>
+<a name="getPacketLengthSequenceTlsAppDataOnly-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getPacketLengthSequenceTlsAppDataOnly</h4>
+<pre>public static java.lang.Integer[] getPacketLengthSequenceTlsAppDataOnly(<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> c)</pre>
+<div class="block">Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its packet length sequence, but only include packet lengths of those
+ packets that carry TLS Application Data.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>c</code> - The <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> from which a TLS Application Data packet length sequence is to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>An <code>Integer[]</code> that holds the packet lengths of all packets in <code>c</code> that carry TLS Application
+ Data. The packet lengths in the returned array are ordered by packet timestamp.</dd>
+</dl>
+</li>
+</ul>
+<a name="isTlsPort-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isTlsPort</h4>
+<pre>public static boolean isTlsPort(int port)</pre>
+<div class="block">Check if a given port number is considered a TLS port.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>port</code> - The port number to check.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if the port number is considered a TLS port, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="sortConversationList-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>sortConversationList</h4>
+<pre>public static java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> sortConversationList(java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</pre>
+<div class="block">Given a list of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects, sort them by timestamps.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>conversations</code> - The list of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects to be sorted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A sorted list of <code>Conversation</code> based on timestamps of the first
+ packet in the <code>Conversation</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="returnConversation-java.util.List-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>returnConversation</h4>
+<pre>public static <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> returnConversation(java.util.List<org.pcap4j.core.PcapPacket> ppList,
+ java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</pre>
+<div class="block">Given a <code>List</code> of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects, find one that has the given <code>List</code>
+ of <code>PcapPacket</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>conversations</code> - The <code>List</code> of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects as reference.</dd>
+<dd><code>ppList</code> - The <code>List</code> of <code>PcapPacket</code> objects to search in the <code>List</code> of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>Conversation</code> that contains the given <code>List</code> of <code>PcapPacket</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="isPartOfConversationAndAdjacent-java.util.List-java.util.List-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>isPartOfConversationAndAdjacent</h4>
+<pre>public static <a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis">TcpConversationUtils.SignaturePosition</a> isPartOfConversationAndAdjacent(java.util.List<org.pcap4j.core.PcapPacket> ppListFirst,
+ java.util.List<org.pcap4j.core.PcapPacket> ppListSecond,
+ <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> conversation)</pre>
+<div class="block">Given a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects, check if <code>List</code> of <code>PcapPacket</code> is part of it and return the
+ adjacency label based on <code>SignaturePosition</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>conversation</code> - The <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> object as reference.</dd>
+<dd><code>ppListFirst</code> - The first <code>List</code> of <code>PcapPacket</code> objects in the <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>.</dd>
+<dd><code>ppListSecond</code> - The second <code>List</code> of <code>PcapPacket</code> objects in the <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> whose
+ position will be observed in the <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> with respect to ppListFirst.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>SignaturePosition</code> that represents the position of the signature against another signature
+ in a <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
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+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">Prev Class</span></a></li>
+<li><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis"><span class="typeNameLink">Next Class</span></a></li>
+</ul>
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+ }
+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li><a href="#nested.class.summary">Nested</a> | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
+</body>
+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>TrafficLabeler</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="TrafficLabeler";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis"><span class="typeNameLink">Prev Class</span></a></li>
+<li><a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">Next Class</span></a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../index.html?edu/uci/iotproject/analysis/TrafficLabeler.html" target="_top">Frames</a></li>
+<li><a href="TrafficLabeler.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../../allclasses-noframe.html">All Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
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+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.analysis</div>
+<h2 title="Class TrafficLabeler" class="title">Class TrafficLabeler</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.analysis.TrafficLabeler</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd>org.pcap4j.core.PacketListener</dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">TrafficLabeler</span>
+extends java.lang.Object
+implements org.pcap4j.core.PacketListener</pre>
+<div class="block">A <code>PacketListener</code> that marks network traffic as (potentially) related to a user's actions by comparing the
+ timestamp of each packet to the timestamps of the provided list of user actions.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#TrafficLabeler-java.util.List-">TrafficLabeler</a></span>(java.util.List<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>> userActions)</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>java.util.Map<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledReassembledTcpTraffic--">getLabeledReassembledTcpTraffic</a></span>()</code>
+<div class="block">Get the labeled traffic reassembled as TCP connections (<b>note:</b> <em>discards</em> all non-TCP traffic).</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>java.util.Map<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>,java.util.Map<java.lang.String,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledReassembledTcpTraffic-edu.uci.iotproject.DnsMap-">getLabeledReassembledTcpTraffic</a></span>(<a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> ipHostnameMappings)</code>
+<div class="block">Like <a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledReassembledTcpTraffic--"><code>getLabeledReassembledTcpTraffic()</code></a>, but uses the provided <code>ipHostnameMappings</code> to group
+ <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s by hostname.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>java.util.Map<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>,java.util.List<org.pcap4j.core.PcapPacket>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledTraffic--">getLabeledTraffic</a></span>()</code>
+<div class="block">Get the labeled traffic.</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code><T> java.util.Map<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>,T></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledTraffic-java.util.function.Function-">getLabeledTraffic</a></span>(java.util.function.Function<java.util.List<org.pcap4j.core.PcapPacket>,T> mappingFunction)</code>
+<div class="block">Like <a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledTraffic--"><code>getLabeledTraffic()</code></a>, but allows the caller to supply a mapping function that is applied to
+ the traffic associated with each <a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><code>UserAction</code></a> (the traffic label) before returning the labeled traffic.</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>long</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getTotalPacketCount--">getTotalPacketCount</a></span>()</code>
+<div class="block">Get the total number of packets labeled by this <code>TrafficLabeler</code>.</div>
+</td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
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+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="TrafficLabeler-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>TrafficLabeler</h4>
+<pre>public TrafficLabeler(java.util.List<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>> userActions)</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
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+<h3>Method Detail</h3>
+<a name="gotPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>gotPacket</h4>
+<pre>public void gotPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code>gotPacket</code> in interface <code>org.pcap4j.core.PacketListener</code></dd>
+</dl>
+</li>
+</ul>
+<a name="getTotalPacketCount--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getTotalPacketCount</h4>
+<pre>public long getTotalPacketCount()</pre>
+<div class="block">Get the total number of packets labeled by this <code>TrafficLabeler</code>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the total number of packets labeled by this <code>TrafficLabeler</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getLabeledTraffic--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getLabeledTraffic</h4>
+<pre>public java.util.Map<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>,java.util.List<org.pcap4j.core.PcapPacket>> getLabeledTraffic()</pre>
+<div class="block">Get the labeled traffic.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>Map</code> in which a <a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><code>UserAction</code></a> points to a <code>List</code> of <code>PcapPacket</code>s believed to
+ be related (occurring as a result of) that <code>UserAction</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getLabeledTraffic-java.util.function.Function-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getLabeledTraffic</h4>
+<pre>public <T> java.util.Map<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>,T> getLabeledTraffic(java.util.function.Function<java.util.List<org.pcap4j.core.PcapPacket>,T> mappingFunction)</pre>
+<div class="block">Like <a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledTraffic--"><code>getLabeledTraffic()</code></a>, but allows the caller to supply a mapping function that is applied to
+ the traffic associated with each <a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><code>UserAction</code></a> (the traffic label) before returning the labeled traffic.
+ This may for example be useful for a caller who wishes to perform some postprocessing of labeled traffic, e.g.,
+ in order to perform additional filtering or to transform the representation of labeled traffic.
+ <p>
+ An example usecase is provided in <a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledReassembledTcpTraffic--"><code>getLabeledReassembledTcpTraffic()</code></a> which uses this function to
+ build a <code>Map</code> in which a <a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><code>UserAction</code></a> points to the reassembled TCP connections believed to have
+ occurred as a result of that <code>UserAction</code>.
+ </p></div>
+<dl>
+<dt><span class="paramLabel">Type Parameters:</span></dt>
+<dd><code>T</code> - The return type of <code>mappingFunction</code>.</dd>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>mappingFunction</code> - A mapping function that converts a <code>List</code> of <code>PcapPacket</code> into some other type
+ <code>T</code>.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>Map</code> in which a <a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><code>UserAction</code></a> points to the result of applying <code>mappingFunction</code> to
+ the set of packets believed to be related (occurring as a result of) that <code>UserAction</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getLabeledReassembledTcpTraffic--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getLabeledReassembledTcpTraffic</h4>
+<pre>public java.util.Map<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>> getLabeledReassembledTcpTraffic()</pre>
+<div class="block">Get the labeled traffic reassembled as TCP connections (<b>note:</b> <em>discards</em> all non-TCP traffic).</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>Map</code> in which a <a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><code>UserAction</code></a> points to a <code>List</code> of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s believed to
+ be related (occurring as a result of) that <code>UserAction</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getLabeledReassembledTcpTraffic-edu.uci.iotproject.DnsMap-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>getLabeledReassembledTcpTraffic</h4>
+<pre>public java.util.Map<<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>,java.util.Map<java.lang.String,java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>>>> getLabeledReassembledTcpTraffic(<a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> ipHostnameMappings)</pre>
+<div class="block">Like <a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledReassembledTcpTraffic--"><code>getLabeledReassembledTcpTraffic()</code></a>, but uses the provided <code>ipHostnameMappings</code> to group
+ <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s by hostname.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>ipHostnameMappings</code> - A <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><code>DnsMap</code></a> with IP to hostname mappings used for reverse DNS lookup.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>Map</code> in which a <a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><code>UserAction</code></a> points to the set of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s believed to be
+ related (occurring as a result of) that <code>UserAction</code>. More precisely, each <code>UserAction</code> in
+ the returned <code>Map</code> points to <em>another</em> <code>Map</code> in which a hostname points to the set of
+ <code>Conversation</code>s involving that hostname.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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+<!-- ======== END OF BOTTOM NAVBAR ======= -->
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+</html>
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>TriggerTrafficExtractor</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
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+<script type="text/javascript"><!--
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+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="TriggerTrafficExtractor";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
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+var activeTableTab = "activeTableTab";
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+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
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+<li><a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">Next Class</span></a></li>
+</ul>
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+<li><a href="../../../../index.html?edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" target="_top">Frames</a></li>
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+<li><a href="#field.summary">Field</a> | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li><a href="#field.detail">Field</a> | </li>
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+</ul>
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+<!-- -->
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.analysis</div>
+<h2 title="Class TriggerTrafficExtractor" class="title">Class TriggerTrafficExtractor</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.analysis.TriggerTrafficExtractor</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd><a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis">PcapPacketFilter</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">TriggerTrafficExtractor</span>
+extends java.lang.Object
+implements <a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis">PcapPacketFilter</a></pre>
+<div class="block">TODO add class documentation.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- =========== FIELD SUMMARY =========== -->
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+<li class="blockList"><a name="field.summary">
+<!-- -->
+</a>
+<h3>Field Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Field Summary table, listing fields, and an explanation">
+<caption><span>Fields</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Field and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><code>static int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#INCLUSION_WINDOW_MILLIS">INCLUSION_WINDOW_MILLIS</a></span></code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#TriggerTrafficExtractor-java.lang.String-java.util.List-java.lang.String-">TriggerTrafficExtractor</a></span>(java.lang.String pcapFilePath,
+ java.util.List<java.time.Instant> triggerTimes,
+ java.lang.String deviceIp)</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>long</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#getPacketsIncludedCount--">getPacketsIncludedCount</a></span>()</code>
+<div class="block">Return the number of extracted packets (i.e., packets selected for inclusion) as a result of the most recent call
+ to <a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#performExtraction-org.pcap4j.core.PacketListener...-"><code>performExtraction(PacketListener...)</code></a>.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#performExtraction-org.pcap4j.core.PacketListener...-">performExtraction</a></span>(org.pcap4j.core.PacketListener... extractedPacketsConsumers)</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#shouldIncludePacket-org.pcap4j.core.PcapPacket-">shouldIncludePacket</a></span>(org.pcap4j.core.PcapPacket packet)</code> </td>
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+<pre>public static final int INCLUSION_WINDOW_MILLIS</pre>
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+<dd><a href="../../../../constant-values.html#edu.uci.iotproject.analysis.TriggerTrafficExtractor.INCLUSION_WINDOW_MILLIS">Constant Field Values</a></dd>
+</dl>
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+<pre>public TriggerTrafficExtractor(java.lang.String pcapFilePath,
+ java.util.List<java.time.Instant> triggerTimes,
+ java.lang.String deviceIp)
+ throws org.pcap4j.core.PcapNativeException,
+ org.pcap4j.core.NotOpenException</pre>
+<dl>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code></dd>
+<dd><code>org.pcap4j.core.NotOpenException</code></dd>
+</dl>
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+<h4>performExtraction</h4>
+<pre>public void performExtraction(org.pcap4j.core.PacketListener... extractedPacketsConsumers)
+ throws org.pcap4j.core.PcapNativeException,
+ org.pcap4j.core.NotOpenException,
+ java.util.concurrent.TimeoutException</pre>
+<dl>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code></dd>
+<dd><code>org.pcap4j.core.NotOpenException</code></dd>
+<dd><code>java.util.concurrent.TimeoutException</code></dd>
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+</li>
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+<pre>public long getPacketsIncludedCount()</pre>
+<div class="block">Return the number of extracted packets (i.e., packets selected for inclusion) as a result of the most recent call
+ to <a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#performExtraction-org.pcap4j.core.PacketListener...-"><code>performExtraction(PacketListener...)</code></a>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the number of extracted packets (i.e., packets selected for inclusion) as a result of the most recent
+ call to <a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#performExtraction-org.pcap4j.core.PacketListener...-"><code>performExtraction(PacketListener...)</code></a>.</dd>
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+<pre>public boolean shouldIncludePacket(org.pcap4j.core.PcapPacket packet)</pre>
+<dl>
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+<dd><code><a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html#shouldIncludePacket-org.pcap4j.core.PcapPacket-">shouldIncludePacket</a></code> in interface <code><a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis">PcapPacketFilter</a></code></dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<title>UserAction.Type</title>
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+ }
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+var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],8:["t4","Concrete Methods"]};
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+<li>Summary: </li>
+<li>Nested | </li>
+<li><a href="#enum.constant.summary">Enum Constants</a> | </li>
+<li>Field | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li><a href="#enum.constant.detail">Enum Constants</a> | </li>
+<li>Field | </li>
+<li><a href="#method.detail">Method</a></li>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.analysis</div>
+<h2 title="Enum UserAction.Type" class="title">Enum UserAction.Type</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>java.lang.Enum<<a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a>></li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.analysis.UserAction.Type</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd>java.io.Serializable, java.lang.Comparable<<a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a>></dd>
+</dl>
+<dl>
+<dt>Enclosing class:</dt>
+<dd><a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public static enum <span class="typeNameLabel">UserAction.Type</span>
+extends java.lang.Enum<<a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a>></pre>
+<div class="block">Enum for indicating what type of action the user performed.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- =========== ENUM CONSTANT SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="enum.constant.summary">
+<!-- -->
+</a>
+<h3>Enum Constant Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Enum Constant Summary table, listing enum constants, and an explanation">
+<caption><span>Enum Constants</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Enum Constant and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html#TOGGLE_OFF">TOGGLE_OFF</a></span></code> </td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html#TOGGLE_ON">TOGGLE_ON</a></span></code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
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+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>static <a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html#valueOf-java.lang.String-">valueOf</a></span>(java.lang.String name)</code>
+<div class="block">Returns the enum constant of this type with the specified name.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>static <a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a>[]</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html#values--">values</a></span>()</code>
+<div class="block">Returns an array containing the constants of this enum type, in
+the order they are declared.</div>
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+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Enum">
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+</a>
+<h3>Methods inherited from class java.lang.Enum</h3>
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+</ul>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>getClass, notify, notifyAll, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+</a>
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+<h4>TOGGLE_ON</h4>
+<pre>public static final <a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a> TOGGLE_ON</pre>
+</li>
+</ul>
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+</a>
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+<li class="blockList">
+<h4>TOGGLE_OFF</h4>
+<pre>public static final <a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a> TOGGLE_OFF</pre>
+</li>
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+<h4>values</h4>
+<pre>public static <a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a>[] values()</pre>
+<div class="block">Returns an array containing the constants of this enum type, in
+the order they are declared. This method may be used to iterate
+over the constants as follows:
+<pre>
+for (UserAction.Type c : UserAction.Type.values())
+ System.out.println(c);
+</pre></div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>an array containing the constants of this enum type, in the order they are declared</dd>
+</dl>
+</li>
+</ul>
+<a name="valueOf-java.lang.String-">
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+</a>
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+<h4>valueOf</h4>
+<pre>public static <a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a> valueOf(java.lang.String name)</pre>
+<div class="block">Returns the enum constant of this type with the specified name.
+The string must match <i>exactly</i> an identifier used to declare an
+enum constant in this type. (Extraneous whitespace characters are
+not permitted.)</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>name</code> - the name of the enum constant to be returned.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the enum constant with the specified name</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.lang.IllegalArgumentException</code> - if this enum type has no constant with the specified name</dd>
+<dd><code>java.lang.NullPointerException</code> - if the argument is null</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+<!-- ========= END OF CLASS DATA ========= -->
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+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>UserAction</title>
+<meta name="date" content="2019-03-28">
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+ parent.document.title="UserAction";
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+ }
+//-->
+var methods = {"i0":10,"i1":9,"i2":10,"i3":10,"i4":10,"i5":9,"i6":10};
+var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
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+<div class="subTitle">edu.uci.iotproject.analysis</div>
+<h2 title="Class UserAction" class="title">Class UserAction</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.analysis.UserAction</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">UserAction</span>
+extends java.lang.Object</pre>
+<div class="block">Models a user's action, such as toggling the smart plug on/off at a given time.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== NESTED CLASS SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="nested.class.summary">
+<!-- -->
+</a>
+<h3>Nested Class Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Nested Class Summary table, listing nested classes, and an explanation">
+<caption><span>Nested Classes</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Class and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><code>static class </code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a></span></code>
+<div class="block">Enum for indicating what type of action the user performed.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.html#UserAction-edu.uci.iotproject.analysis.UserAction.Type-java.time.Instant-">UserAction</a></span>(<a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a> typeOfAction,
+ java.time.Instant timeOfAction)</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.html#equals-java.lang.Object-">equals</a></span>(java.lang.Object obj)</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>static <a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.html#fromString-java.lang.String-">fromString</a></span>(java.lang.String string)</code>
+<div class="block">Instantiates a <code>UserAction</code> from a string that obeys the format used in <a href="../../../../edu/uci/iotproject/analysis/UserAction.html#toString--"><code>toString()</code></a>.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>java.time.Instant</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.html#getTimestamp--">getTimestamp</a></span>()</code>
+<div class="block">Get the time at which the user performed this action.</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code><a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.html#getType--">getType</a></span>()</code>
+<div class="block">Get the specific type of action performed by the user.</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.html#hashCode--">hashCode</a></span>()</code> </td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.html#setTimestampFormatter-java.time.format.DateTimeFormatter-">setTimestampFormatter</a></span>(java.time.format.DateTimeFormatter formatter)</code>
+<div class="block">Sets the <code>DateTimeFormatter</code> used when outputting a user action as a string and parsing a user action from
+ a string.</div>
+</td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/analysis/UserAction.html#toString--">toString</a></span>()</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>getClass, notify, notifyAll, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="UserAction-edu.uci.iotproject.analysis.UserAction.Type-java.time.Instant-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>UserAction</h4>
+<pre>public UserAction(<a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a> typeOfAction,
+ java.time.Instant timeOfAction)</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="setTimestampFormatter-java.time.format.DateTimeFormatter-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setTimestampFormatter</h4>
+<pre>public static void setTimestampFormatter(java.time.format.DateTimeFormatter formatter)</pre>
+<div class="block">Sets the <code>DateTimeFormatter</code> used when outputting a user action as a string and parsing a user action from
+ a string.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>formatter</code> - The formatter to use for outputting and parsing.</dd>
+</dl>
+</li>
+</ul>
+<a name="fromString-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>fromString</h4>
+<pre>public static <a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a> fromString(java.lang.String string)</pre>
+<div class="block">Instantiates a <code>UserAction</code> from a string that obeys the format used in <a href="../../../../edu/uci/iotproject/analysis/UserAction.html#toString--"><code>toString()</code></a>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>string</code> - The string that represents a <code>UserAction</code></dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>UserAction</code> resulting from deserializing the string.</dd>
+</dl>
+</li>
+</ul>
+<a name="getType--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getType</h4>
+<pre>public <a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a> getType()</pre>
+<div class="block">Get the specific type of action performed by the user.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the specific type of action performed by the user.</dd>
+</dl>
+</li>
+</ul>
+<a name="getTimestamp--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getTimestamp</h4>
+<pre>public java.time.Instant getTimestamp()</pre>
+<div class="block">Get the time at which the user performed this action.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the time at which the user performed this action.</dd>
+</dl>
+</li>
+</ul>
+<a name="equals-java.lang.Object-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>equals</h4>
+<pre>public boolean equals(java.lang.Object obj)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
+<dd><code>equals</code> in class <code>java.lang.Object</code></dd>
+</dl>
+</li>
+</ul>
+<a name="hashCode--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>hashCode</h4>
+<pre>public int hashCode()</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
+<dd><code>hashCode</code> in class <code>java.lang.Object</code></dd>
+</dl>
+</li>
+</ul>
+<a name="toString--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>toString</h4>
+<pre>public java.lang.String toString()</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
+<dd><code>toString</code> in class <code>java.lang.Object</code></dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
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+<div class="indexContainer">
+<h2 title="Interfaces">Interfaces</h2>
+<ul title="Interfaces">
+<li><a href="PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis" target="classFrame"><span class="interfaceName">PcapPacketFilter</span></a></li>
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+<li><a href="TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis" target="classFrame">TcpConversationUtils</a></li>
+<li><a href="TrafficLabeler.html" title="class in edu.uci.iotproject.analysis" target="classFrame">TrafficLabeler</a></li>
+<li><a href="TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis" target="classFrame">TriggerTrafficExtractor</a></li>
+<li><a href="UserAction.html" title="class in edu.uci.iotproject.analysis" target="classFrame">UserAction</a></li>
+</ul>
+<h2 title="Enums">Enums</h2>
+<ul title="Enums">
+<li><a href="TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis" target="classFrame">TcpConversationUtils.SignaturePosition</a></li>
+<li><a href="UserAction.Type.html" title="enum in edu.uci.iotproject.analysis" target="classFrame">UserAction.Type</a></li>
+</ul>
+</div>
+</body>
+</html>
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+<div class="header">
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+<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Interface Summary table, listing interfaces, and an explanation">
+<caption><span>Interface Summary</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Interface</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis">PcapPacketFilter</a></td>
+<td class="colLast">
+<div class="block">TODO add class documentation.</div>
+</td>
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+</li>
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+<caption><span>Class Summary</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Class</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></td>
+<td class="colLast">
+<div class="block">
+ A simple wrapper for holding a pair of packets (e.g., a request and associated reply packet).</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></td>
+<td class="colLast">
+<div class="block">Utility functions for analyzing and structuring (sets of) <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis">TrafficLabeler</a></td>
+<td class="colLast">
+<div class="block">A <code>PacketListener</code> that marks network traffic as (potentially) related to a user's actions by comparing the
+ timestamp of each packet to the timestamps of the provided list of user actions.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis">TriggerTrafficExtractor</a></td>
+<td class="colLast">
+<div class="block">TODO add class documentation.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></td>
+<td class="colLast">
+<div class="block">Models a user's action, such as toggling the smart plug on/off at a given time.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList">
+<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Enum Summary table, listing enums, and an explanation">
+<caption><span>Enum Summary</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Enum</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis">TcpConversationUtils.SignaturePosition</a></td>
+<td class="colLast">
+<div class="block">Identifies the adjacency type of the signature for merging.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a></td>
+<td class="colLast">
+<div class="block">Enum for indicating what type of action the user performed.</div>
+</td>
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+<ul>
+<li type="circle">java.lang.Object
+<ul>
+<li type="circle">edu.uci.iotproject.analysis.<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">PcapPacketPair</span></a> (implements org.apache.commons.math3.stat.clustering.Clusterable<T>)</li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="../../../../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">TcpConversationUtils</span></a></li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="../../../../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">TrafficLabeler</span></a> (implements org.pcap4j.core.PacketListener)</li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="../../../../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">TriggerTrafficExtractor</span></a> (implements edu.uci.iotproject.analysis.<a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis">PcapPacketFilter</a>)</li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">UserAction</span></a></li>
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+<h2 title="Interface Hierarchy">Interface Hierarchy</h2>
+<ul>
+<li type="circle">edu.uci.iotproject.analysis.<a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis"><span class="typeNameLink">PcapPacketFilter</span></a></li>
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+<li type="circle">edu.uci.iotproject.analysis.<a href="../../../../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis"><span class="typeNameLink">UserAction.Type</span></a></li>
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+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
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+<div class="subTitle">edu.uci.iotproject.comparison.seqalignment</div>
+<h2 title="Class AlignmentPricer" class="title">Class AlignmentPricer<T></h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.comparison.seqalignment.AlignmentPricer<T></li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt><span class="paramLabel">Type Parameters:</span></dt>
+<dd><code>T</code> - The type of the elements that are being aligned.</dd>
+</dl>
+<dl>
+<dt>Direct Known Subclasses:</dt>
+<dd><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">SampleIntegerAlignmentPricer</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">AlignmentPricer<T></span>
+extends java.lang.Object</pre>
+<div class="block">Provides a generic implementation for the calculation of the cost of aligning two elements of a sequence as part of
+ the sequence alignment algorithm (the algorithm is implemented in <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>).</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
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+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html#AlignmentPricer-java.util.function.ToIntBiFunction-java.util.function.ToIntFunction-">AlignmentPricer</a></span>(java.util.function.ToIntBiFunction<<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a>,<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a>> alignmentCostFunction,
+ java.util.function.ToIntFunction<<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a>> gapCostFunction)</code>
+<div class="block">Constructs a new <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>AlignmentPricer</code></a>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html#alignmentCost-T-T-">alignmentCost</a></span>(<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a> item1,
+ <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a> item2)</code>
+<div class="block">Calculate the cost of aligning <code>item1</code> with <code>item2</code>.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
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+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="AlignmentPricer-java.util.function.ToIntBiFunction-java.util.function.ToIntFunction-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>AlignmentPricer</h4>
+<pre>public AlignmentPricer(java.util.function.ToIntBiFunction<<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a>,<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a>> alignmentCostFunction,
+ java.util.function.ToIntFunction<<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a>> gapCostFunction)</pre>
+<div class="block">Constructs a new <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>AlignmentPricer</code></a>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>alignmentCostFunction</code> - A function that specifies the cost of aligning a <code>T</code> with some other <code>T</code>
+ (e.g., based on the values of the properties of the two instances).</dd>
+<dd><code>gapCostFunction</code> - A function that specifies the cost of aligning a <code>T</code> with a gap. Note that the
+ function is free to specify <em>different</em> gap costs for different <code>T</code>s.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="alignmentCost-java.lang.Object-java.lang.Object-">
+<!-- -->
+</a><a name="alignmentCost-T-T-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>alignmentCost</h4>
+<pre>public int alignmentCost(<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a> item1,
+ <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a> item2)</pre>
+<div class="block">Calculate the cost of aligning <code>item1</code> with <code>item2</code>. If either of the two arguments is set to
+ <code>null</code>, the cost of aligning the other argument with a gap will be returned. Note that both arguments
+ cannot be <code>null</code> at the same time as that translates to aligning a gap with a gap, which is pointless.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>item1</code> - The first of the two aligned objects. Set to <code>null</code> to calculate the cost of aligning
+ <code>item2</code> with a gap.</dd>
+<dd><code>item2</code> - The second of the two aligned objects. Set to <code>null</code> to calculate the cost of aligning
+ <code>item2</code> with a gap.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The cost of aligning <code>item1</code> with <code>item2</code>.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
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+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
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+<li>Summary: </li>
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+</ul>
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+<li>Detail: </li>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.comparison.seqalignment</div>
+<h2 title="Class ExtractedSequence" class="title">Class ExtractedSequence</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.comparison.seqalignment.ExtractedSequence</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">ExtractedSequence</span>
+extends java.lang.Object</pre>
+<div class="block">TODO add class documentation.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
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+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html#ExtractedSequence-edu.uci.iotproject.trafficreassembly.layer3.Conversation-int-boolean-">ExtractedSequence</a></span>(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> sequence,
+ int maxAlignmentCost,
+ boolean tlsAppDataAlignment)</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html#getMaxAlignmentCost--">getMaxAlignmentCost</a></span>()</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html#getRepresentativeSequence--">getRepresentativeSequence</a></span>()</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="ExtractedSequence-edu.uci.iotproject.trafficreassembly.layer3.Conversation-int-boolean-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>ExtractedSequence</h4>
+<pre>public ExtractedSequence(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> sequence,
+ int maxAlignmentCost,
+ boolean tlsAppDataAlignment)</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="getRepresentativeSequence--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getRepresentativeSequence</h4>
+<pre>public <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> getRepresentativeSequence()</pre>
+</li>
+</ul>
+<a name="getMaxAlignmentCost--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>getMaxAlignmentCost</h4>
+<pre>public int getMaxAlignmentCost()</pre>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<ul class="subNavList">
+<li>Detail: </li>
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+<!-- -->
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+<!-- ======== END OF BOTTOM NAVBAR ======= -->
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+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
+<title>SampleIntegerAlignmentPricer</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="SampleIntegerAlignmentPricer";
+ }
+ }
+ catch(err) {
+ }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
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+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
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+<ul class="navList" title="Navigation">
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+<div class="header">
+<div class="subTitle">edu.uci.iotproject.comparison.seqalignment</div>
+<h2 title="Class SampleIntegerAlignmentPricer" class="title">Class SampleIntegerAlignmentPricer</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">edu.uci.iotproject.comparison.seqalignment.AlignmentPricer</a><java.lang.Integer></li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.comparison.seqalignment.SampleIntegerAlignmentPricer</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">SampleIntegerAlignmentPricer</span>
+extends <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a><java.lang.Integer></pre>
+<div class="block">A sample <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>AlignmentPricer</code></a> for computing the cost of aligning integer values. In this sample implementation,
+ the cost of aligning two integers <code>i1</code> and <code>i2</code> is <code>Math.abs(i1 - i2)</code>, i.e., it is the absolute
+ value of the difference between <code>i1</code> and <code>i2</code>. The cost of aligning an integer <code>i</code> with a gap is
+ simply <code>i</code>, i.e., the gap is essentially treated as a zero.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html#SampleIntegerAlignmentPricer--">SampleIntegerAlignmentPricer</a></span>()</code>
+<div class="block">Constructs a new <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SampleIntegerAlignmentPricer</code></a>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
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+<li class="blockList"><a name="method.summary">
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+<h3>Method Summary</h3>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.edu.uci.iotproject.comparison.seqalignment.AlignmentPricer">
+<!-- -->
+</a>
+<h3>Methods inherited from class edu.uci.iotproject.comparison.seqalignment.<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a></h3>
+<code><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html#alignmentCost-T-T-">alignmentCost</a></code></li>
+</ul>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="SampleIntegerAlignmentPricer--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>SampleIntegerAlignmentPricer</h4>
+<pre>public SampleIntegerAlignmentPricer()</pre>
+<div class="block">Constructs a new <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SampleIntegerAlignmentPricer</code></a>.</div>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+<div class="subTitle">edu.uci.iotproject.comparison.seqalignment</div>
+<h2 title="Class SequenceAlignment" class="title">Class SequenceAlignment<ALIGNMENT_UNIT></h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.comparison.seqalignment.SequenceAlignment<ALIGNMENT_UNIT></li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt><span class="paramLabel">Type Parameters:</span></dt>
+<dd><code>ALIGNMENT_UNIT</code> - The <em>unit of the alignment</em>, or, in other words, the <em>granularity</em> of the
+ alignment. For example, for 'classical' string alignment (as in sequence alignment where we
+ try to align two strings character by character -- the example most often used in books on
+ algorithms) this would be a <code>Character</code>. As a second example, by specifying
+ <code>String</code>, one can decrease the granularity so as to align <em>blocks</em> of characters
+ (e.g., if one wants to align to two string arrays).</dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">SequenceAlignment<ALIGNMENT_UNIT></span>
+extends java.lang.Object</pre>
+<div class="block">A generic implementation of the sequence alignment algorithm given in Kleinberg's and Tardos' "Algorithm Design".
+ This implementation is the basic version. There is a more complex version which significantly reduces the space
+ complexity at a slight cost to time complexity.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html#SequenceAlignment-edu.uci.iotproject.comparison.seqalignment.AlignmentPricer-">SequenceAlignment</a></span>(<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a><<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="type parameter in SequenceAlignment">ALIGNMENT_UNIT</a>> alignmentPricer)</code>
+<div class="block">Constructs a new <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html#calculateAlignment-ALIGNMENT_UNIT:A-ALIGNMENT_UNIT:A-">calculateAlignment</a></span>(<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="type parameter in SequenceAlignment">ALIGNMENT_UNIT</a>[] sequence1,
+ <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="type parameter in SequenceAlignment">ALIGNMENT_UNIT</a>[] sequence2)</code>
+<div class="block">Calculates the cost of aligning <code>sequence1</code> with <code>sequence2</code>.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="SequenceAlignment-edu.uci.iotproject.comparison.seqalignment.AlignmentPricer-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>SequenceAlignment</h4>
+<pre>public SequenceAlignment(<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a><<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="type parameter in SequenceAlignment">ALIGNMENT_UNIT</a>> alignmentPricer)</pre>
+<div class="block">Constructs a new <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>. The new instance relies on the provided <code>alignmentPricer</code> to
+ provide the cost of aligning two <code>ALIGNMENT_UNIT</code>s as well as the cost of aligning an
+ <code>ALIGNMENT_UNIT</code> with a gap.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>alignmentPricer</code> - An <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>AlignmentPricer</code></a> that provides the cost of aligning two <code>ALIGNMENT_UNIT</code>s
+ with one another as well as the cost of aligning an <code>ALIGNMENT_UNIT</code> with a gap.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="calculateAlignment-java.lang.Object:A-java.lang.Object:A-">
+<!-- -->
+</a><a name="calculateAlignment-ALIGNMENT_UNIT:A-ALIGNMENT_UNIT:A-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>calculateAlignment</h4>
+<pre>public int calculateAlignment(<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="type parameter in SequenceAlignment">ALIGNMENT_UNIT</a>[] sequence1,
+ <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="type parameter in SequenceAlignment">ALIGNMENT_UNIT</a>[] sequence2)</pre>
+<div class="block">Calculates the cost of aligning <code>sequence1</code> with <code>sequence2</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>sequence1</code> - A sequence that is to be aligned with <code>sequence2</code>.</dd>
+<dd><code>sequence2</code> - A sequence that is to be aligned with <code>sequence1</code>.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The cost of aligning <code>sequence1</code> with <code>sequence2</code>.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
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+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.comparison.seqalignment</div>
+<h2 title="Class SequenceExtraction" class="title">Class SequenceExtraction</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.comparison.seqalignment.SequenceExtraction</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">SequenceExtraction</span>
+extends java.lang.Object</pre>
+<div class="block">TODO add class documentation.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
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+<li class="blockList"><a name="constructor.summary">
+<!-- -->
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+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#SequenceExtraction--">SequenceExtraction</a></span>()</code> </td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#SequenceExtraction-edu.uci.iotproject.comparison.seqalignment.SequenceAlignment-">SequenceExtraction</a></span>(<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceAlignment</a><java.lang.Integer> alignmentAlgorithm)</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
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+<!-- -->
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+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment">ExtractedSequence</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#extract-java.util.List-">extract</a></span>(java.util.List<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> convsForActionForHostname)</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment">ExtractedSequence</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#extractByTlsAppData-java.util.List-">extractByTlsAppData</a></span>(java.util.List<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> convsForActionForHostname)</code> </td>
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+<tr id="i2" class="altColor">
+<td class="colFirst"><code><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceAlignment</a><java.lang.Integer></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#getAlignmentAlgorithm--">getAlignmentAlgorithm</a></span>()</code>
+<div class="block">Gets the <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a> used to perform the sequence extraction.</div>
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+</ul>
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+<ul class="blockList">
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+<li class="blockList"><a name="constructor.detail">
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+</a>
+<h3>Constructor Detail</h3>
+<a name="SequenceExtraction--">
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+<h4>SequenceExtraction</h4>
+<pre>public SequenceExtraction()</pre>
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+<dd>the <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a> used to perform the sequence extraction.</dd>
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+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
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+<!-- NewPage -->
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+<head>
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+<div class="indexContainer">
+<h2 title="Classes">Classes</h2>
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+<li><a href="SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment" target="classFrame">SequenceAlignment</a></li>
+<li><a href="SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment" target="classFrame">SequenceExtraction</a></li>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
+<h1 title="Package" class="title">Package edu.uci.iotproject.comparison.seqalignment</h1>
+</div>
+<div class="contentContainer">
+<ul class="blockList">
+<li class="blockList">
+<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Class Summary table, listing classes, and an explanation">
+<caption><span>Class Summary</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Class</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a><T></td>
+<td class="colLast">
+<div class="block">Provides a generic implementation for the calculation of the cost of aligning two elements of a sequence as part of
+ the sequence alignment algorithm (the algorithm is implemented in <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>).</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment">ExtractedSequence</a></td>
+<td class="colLast">
+<div class="block">TODO add class documentation.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">SampleIntegerAlignmentPricer</a></td>
+<td class="colLast">
+<div class="block">A sample <a href="../../../../../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>AlignmentPricer</code></a> for computing the cost of aligning integer values.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceAlignment</a><ALIGNMENT_UNIT></td>
+<td class="colLast">
+<div class="block">A generic implementation of the sequence alignment algorithm given in Kleinberg's and Tardos' "Algorithm Design".</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceExtraction</a></td>
+<td class="colLast">
+<div class="block">TODO add class documentation.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
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+<span class="packageHierarchyLabel">Package Hierarchies:</span>
+<ul class="horizontal">
+<li><a href="../../../../../overview-tree.html">All Packages</a></li>
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+<h2 title="Class Hierarchy">Class Hierarchy</h2>
+<ul>
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+<li type="circle">edu.uci.iotproject.comparison.seqalignment.<a href="../../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">SequenceAlignment</span></a><ALIGNMENT_UNIT></li>
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+</ul>
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+<!-- NewPage -->
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+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
+<title>AbstractClusterMatcher</title>
+<meta name="date" content="2019-03-28">
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+<h2 title="Class AbstractClusterMatcher" class="title">Class AbstractClusterMatcher</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.detection.AbstractClusterMatcher</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>Direct Known Subclasses:</dt>
+<dd><a href="../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2ClusterMatcher</a>, <a href="../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3">Layer3ClusterMatcher</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public abstract class <span class="typeNameLabel">AbstractClusterMatcher</span>
+extends java.lang.Object</pre>
+<div class="block">Base class for classes that search a traffic trace for sequences of packets that "belong to" a given cluster (in
+ other words, classes that attempt to classify traffic as pertaining to a given cluster).</div>
+</li>
+</ul>
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+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html#addObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">addObserver</a></span>(<a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a> observer)</code>
+<div class="block">Register for callbacks from this cluster matcher.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html#removeObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">removeObserver</a></span>(<a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a> observer)</code>
+<div class="block">Deregister for callbacks from this cluster matcher.</div>
+</td>
+</tr>
+</table>
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+<h3>Methods inherited from class java.lang.Object</h3>
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+<a name="addObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">
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+<h4>addObserver</h4>
+<pre>public final void addObserver(<a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a> observer)</pre>
+<div class="block">Register for callbacks from this cluster matcher.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>observer</code> - The target of the callbacks.</dd>
+</dl>
+</li>
+</ul>
+<a name="removeObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">
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+<h4>removeObserver</h4>
+<pre>public final void removeObserver(<a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a> observer)</pre>
+<div class="block">Deregister for callbacks from this cluster matcher.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>observer</code> - The callback target that is to be deregistered.</dd>
+</dl>
+</li>
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+<div class="header">
+<div class="subTitle">edu.uci.iotproject.detection</div>
+<h2 title="Class AbstractSignatureDetector" class="title">Class AbstractSignatureDetector</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.detection.AbstractSignatureDetector</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd><a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public abstract class <span class="typeNameLabel">AbstractSignatureDetector</span>
+extends java.lang.Object
+implements <a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a></pre>
+<div class="block">TODO add class documentation.</div>
+</li>
+</ul>
+</div>
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+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/detection/AbstractSignatureDetector.html#AbstractSignatureDetector-java.util.List-">AbstractSignatureDetector</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature)</code> </td>
+</tr>
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+<!-- -->
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+<h3>Methods inherited from interface edu.uci.iotproject.detection.<a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a></h3>
+<code><a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">onMatch</a></code></li>
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+<h4>AbstractSignatureDetector</h4>
+<pre>public AbstractSignatureDetector(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature)</pre>
+</li>
+</ul>
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+ }
+//-->
+var methods = {"i0":6};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"]};
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+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
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+<a name="skip.navbar.top">
+<!-- -->
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.detection</div>
+<h2 title="Interface ClusterMatcherObserver" class="title">Interface ClusterMatcherObserver</h2>
+</div>
+<div class="contentContainer">
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Known Implementing Classes:</dt>
+<dd><a href="../../../../edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection">AbstractSignatureDetector</a>, <a href="../../../../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a>, <a href="../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public interface <span class="typeNameLabel">ClusterMatcherObserver</span></pre>
+<div class="block">Interface used by client code to register for receiving a notification whenever an <a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a>
+ detects traffic that matches an element of its associated cluster.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========== METHOD SUMMARY =========== -->
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+<li class="blockList"><a name="method.summary">
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+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">onMatch</a></span>(<a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a> clusterMatcher,
+ java.util.List<org.pcap4j.core.PcapPacket> match)</code>
+<div class="block">Callback that is invoked by an <a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> whenever it detects traffic that matches an element
+ of its associated cluster.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
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+<!-- -->
+</a>
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+<h4>onMatch</h4>
+<pre>void onMatch(<a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a> clusterMatcher,
+ java.util.List<org.pcap4j.core.PcapPacket> match)</pre>
+<div class="block">Callback that is invoked by an <a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> whenever it detects traffic that matches an element
+ of its associated cluster.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>clusterMatcher</code> - The <a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> that detected a match (i.e., classified traffic as
+ pertaining to its associated cluster).</dd>
+<dd><code>match</code> - The traffic that was deemed to match the cluster associated with <code>clusterMatcher</code>.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+ parent.document.title="SignatureDetectorObserver";
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+ }
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+ }
+//-->
+var methods = {"i0":6};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"]};
+var altColor = "altColor";
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+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
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+<li><a href="../../../../index-files/index-1.html">Index</a></li>
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+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection"><span class="typeNameLink">Prev Class</span></a></li>
+<li>Next Class</li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../index.html?edu/uci/iotproject/detection/SignatureDetectorObserver.html" target="_top">Frames</a></li>
+<li><a href="SignatureDetectorObserver.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../../allclasses-noframe.html">All Classes</a></li>
+</ul>
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+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.detection</div>
+<h2 title="Interface SignatureDetectorObserver" class="title">Interface SignatureDetectorObserver</h2>
+</div>
+<div class="contentContainer">
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public interface <span class="typeNameLabel">SignatureDetectorObserver</span></pre>
+<div class="block">Used for registering for notifications from a signature detector.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/detection/SignatureDetectorObserver.html#onSignatureDetected-java.util.List-java.util.List-">onSignatureDetected</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature,
+ java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> matchingTraffic)</code>
+<div class="block">Invoked when the signature detector has detected the presence of a signature in the traffic that it's examining.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="onSignatureDetected-java.util.List-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>onSignatureDetected</h4>
+<pre>void onSignatureDetected(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature,
+ java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> matchingTraffic)</pre>
+<div class="block">Invoked when the signature detector has detected the presence of a signature in the traffic that it's examining.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>searchedSignature</code> - The signature that the signature detector reporting the match is searching for.</dd>
+<dd><code>matchingTraffic</code> - The actual traffic trace that matches the searched signature.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
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+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
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+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection"><span class="typeNameLink">Prev Class</span></a></li>
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+<li><a href="#method.summary">Method</a></li>
+</ul>
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+<li><a href="#method.detail">Method</a></li>
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+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
+<title>Layer2AbstractMatcher</title>
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+<script type="text/javascript"><!--
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+ parent.document.title="Layer2AbstractMatcher";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10,"i3":6,"i4":6};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"],8:["t4","Concrete Methods"]};
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+<li>Detail: </li>
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+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.detection.layer2</div>
+<h2 title="Class Layer2AbstractMatcher" class="title">Class Layer2AbstractMatcher</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.detection.layer2.Layer2AbstractMatcher</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>Direct Known Subclasses:</dt>
+<dd><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2RangeMatcher</a>, <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SequenceMatcher</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public abstract class <span class="typeNameLabel">Layer2AbstractMatcher</span>
+extends java.lang.Object</pre>
+<div class="block">Base class for layer 2 matchers (<code>Layer2SequenceMatcher</code> and <code>Layer2RangeMatcher</code>).</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#Layer2AbstractMatcher-java.util.List-">Layer2AbstractMatcher</a></span>(java.util.List<org.pcap4j.core.PcapPacket> sequence)</code>
+<div class="block">Create a <code>Layer2AbstractMatcher</code>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
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+<li class="blockList"><a name="method.summary">
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+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>org.pcap4j.core.PcapPacket</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getLastPacket--">getLastPacket</a></span>()</code>
+<div class="block">Utility for <code>getMatchedPackets().get(getMatchedPackets().size()-1)</code>.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>java.util.List<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getMatchedPackets--">getMatchedPackets</a></span>()</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getMatchedPacketsCount--">getMatchedPacketsCount</a></span>()</code> </td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>abstract int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getTargetSequencePacketCount--">getTargetSequencePacketCount</a></span>()</code>
+<div class="block">See the implementer class for the following method.</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>abstract boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-">matchPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">See the implementer class for the following method.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Layer2AbstractMatcher-java.util.List-">
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+</a>
+<ul class="blockListLast">
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+<h4>Layer2AbstractMatcher</h4>
+<pre>public Layer2AbstractMatcher(java.util.List<org.pcap4j.core.PcapPacket> sequence)</pre>
+<div class="block">Create a <code>Layer2AbstractMatcher</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>sequence</code> - The sequence of the signature.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
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+<li class="blockList"><a name="method.detail">
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+<a name="matchPacket-org.pcap4j.core.PcapPacket-">
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+<h4>matchPacket</h4>
+<pre>public abstract boolean matchPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">See the implementer class for the following method.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - </dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if this <code>Layer2SequenceMatcher</code> could advance by adding <code>packet</code> to its set of
+ matched packets, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="getTargetSequencePacketCount--">
+<!-- -->
+</a>
+<ul class="blockList">
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+<h4>getTargetSequencePacketCount</h4>
+<pre>public abstract int getTargetSequencePacketCount()</pre>
+<div class="block">See the implementer class for the following method.</div>
+</li>
+</ul>
+<a name="getMatchedPacketsCount--">
+<!-- -->
+</a>
+<ul class="blockList">
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+<h4>getMatchedPacketsCount</h4>
+<pre>public int getMatchedPacketsCount()</pre>
+</li>
+</ul>
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+</a>
+<ul class="blockList">
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+<h4>getMatchedPackets</h4>
+<pre>public java.util.List<org.pcap4j.core.PcapPacket> getMatchedPackets()</pre>
+</li>
+</ul>
+<a name="getLastPacket--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>getLastPacket</h4>
+<pre>public org.pcap4j.core.PcapPacket getLastPacket()</pre>
+<div class="block">Utility for <code>getMatchedPackets().get(getMatchedPackets().size()-1)</code>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The last matched packet, or <code>null</code> if no packets have been matched yet.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
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+<title>Layer2ClusterMatcher</title>
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+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.detection.layer2</div>
+<h2 title="Class Layer2ClusterMatcher" class="title">Class Layer2ClusterMatcher</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li><a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">edu.uci.iotproject.detection.AbstractClusterMatcher</a></li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.detection.layer2.Layer2ClusterMatcher</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowObserver</a>, <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassemblerObserver</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">Layer2ClusterMatcher</span>
+extends <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a>
+implements <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassemblerObserver</a>, <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowObserver</a></pre>
+<div class="block">Attempts to detect members of a cluster (packet sequence mutations) in layer 2 flows.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html#Layer2ClusterMatcher-java.util.List-java.util.function.Function-int-boolean-double-">Layer2ClusterMatcher</a></span>(java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> cluster,
+ java.util.function.Function<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a>,java.lang.Boolean> flowFilter,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps)</code>
+<div class="block">Create a new <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> that attempts to find occurrences of <code>cluster</code>'s members.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html#Layer2ClusterMatcher-java.util.List-int-boolean-double-">Layer2ClusterMatcher</a></span>(java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> cluster,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps)</code>
+<div class="block">Create a new <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> that attempts to find occurrences of <code>cluster</code>'s members.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html#onNewFlow-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassembler-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-">onNewFlow</a></span>(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a> reassembler,
+ <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a> newFlow)</code>
+<div class="block">Invoked when when a <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a> detects a new flow (i.e., when it encounters traffic between two
+ MAC addresses that has not previously communicated in the traffic trace).</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html#onNewPacket-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-org.pcap4j.core.PcapPacket-">onNewPacket</a></span>(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a> flow,
+ org.pcap4j.core.PcapPacket newPacket)</code>
+<div class="block">Invoked when a new packet is added to the observed flow.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.edu.uci.iotproject.detection.AbstractClusterMatcher">
+<!-- -->
+</a>
+<h3>Methods inherited from class edu.uci.iotproject.detection.<a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a></h3>
+<code><a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html#addObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">addObserver</a>, <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html#removeObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">removeObserver</a></code></li>
+</ul>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Layer2ClusterMatcher-java.util.List-int-boolean-double-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>Layer2ClusterMatcher</h4>
+<pre>public Layer2ClusterMatcher(java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> cluster,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps)</pre>
+<div class="block">Create a new <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> that attempts to find occurrences of <code>cluster</code>'s members.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>cluster</code> - The sequence mutations that the new <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> should search for.</dd>
+</dl>
+</li>
+</ul>
+<a name="Layer2ClusterMatcher-java.util.List-java.util.function.Function-int-boolean-double-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>Layer2ClusterMatcher</h4>
+<pre>public Layer2ClusterMatcher(java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> cluster,
+ java.util.function.Function<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a>,java.lang.Boolean> flowFilter,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps)</pre>
+<div class="block">Create a new <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> that attempts to find occurrences of <code>cluster</code>'s members.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>cluster</code> - The sequence mutations that the new <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> should search for.</dd>
+<dd><code>flowFilter</code> - A filter that defines what <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2Flow</code></a>s the new <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> should
+ search for <code>cluster</code>'s members in. If <code>flowFilter</code> returns <code>true</code>, the flow
+ will be included (searched). Note that <code>flowFilter</code> is only queried once for each flow,
+ namely when the <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a> notifies the <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> about
+ the new flow. This functionality may for example come in handy when one only wants to search
+ for matches in the subset of flows that involves a specific (range of) MAC(s).</dd>
+<dd><code>inclusionTimeMillis</code> - Packet inclusion time limit for matching.</dd>
+<dd><code>isRangeBased</code> - The boolean that decides if it is range-based vs. strict matching.</dd>
+<dd><code>eps</code> - The epsilon value used in the DBSCAN algorithm.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="onNewPacket-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>onNewPacket</h4>
+<pre>public void onNewPacket(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a> flow,
+ org.pcap4j.core.PcapPacket newPacket)</pre>
+<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html#onNewPacket-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-org.pcap4j.core.PcapPacket-">Layer2FlowObserver</a></code></span></div>
+<div class="block">Invoked when a new packet is added to the observed flow.</div>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html#onNewPacket-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-org.pcap4j.core.PcapPacket-">onNewPacket</a></code> in interface <code><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowObserver</a></code></dd>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>flow</code> - The observed flow.</dd>
+<dd><code>newPacket</code> - The packet that was added to the flow.</dd>
+</dl>
+</li>
+</ul>
+<a name="onNewFlow-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassembler-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>onNewFlow</h4>
+<pre>public void onNewFlow(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a> reassembler,
+ <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a> newFlow)</pre>
+<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html#onNewFlow-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassembler-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-">Layer2FlowReassemblerObserver</a></code></span></div>
+<div class="block">Invoked when when a <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a> detects a new flow (i.e., when it encounters traffic between two
+ MAC addresses that has not previously communicated in the traffic trace).</div>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html#onNewFlow-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassembler-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-">onNewFlow</a></code> in interface <code><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassemblerObserver</a></code></dd>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>reassembler</code> - The <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a> that detected the new flow.</dd>
+<dd><code>newFlow</code> - The new flow.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
+<title>Layer2RangeMatcher</title>
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+<div class="subTitle">edu.uci.iotproject.detection.layer2</div>
+<h2 title="Class Layer2RangeMatcher" class="title">Class Layer2RangeMatcher</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">edu.uci.iotproject.detection.layer2.Layer2AbstractMatcher</a></li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.detection.layer2.Layer2RangeMatcher</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">Layer2RangeMatcher</span>
+extends <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></pre>
+<div class="block">Attempts to detect the presence of a specific packet sequence in the set of packets provided through multiple calls
+ to <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-"><code>matchPacket(PcapPacket)</code></a>, considering only layer 2 information. This class has the same flavor as the
+ <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2SequenceMatcher</code></a> class.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#Layer2RangeMatcher-java.util.List-java.util.List-int-double-">Layer2RangeMatcher</a></span>(java.util.List<org.pcap4j.core.PcapPacket> lowerBound,
+ java.util.List<org.pcap4j.core.PcapPacket> upperBound,
+ int inclusionTimeMillis,
+ double eps)</code>
+<div class="block">Create a <code>Layer2RangeMatcher</code>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>java.util.List<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#getTargetLowerBound--">getTargetLowerBound</a></span>()</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#getTargetSequencePacketCount--">getTargetSequencePacketCount</a></span>()</code>
+<div class="block">See the implementer class for the following method.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>java.util.List<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#getTargetUpperBound--">getTargetUpperBound</a></span>()</code> </td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-">matchPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Attempt to advance this <code>Layer2RangeMatcher</code> by matching <code>packet</code> against the packet that this
+ <code>Layer2RangeMatcher</code> expects as the next packet of the sequence it is searching for.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.edu.uci.iotproject.detection.layer2.Layer2AbstractMatcher">
+<!-- -->
+</a>
+<h3>Methods inherited from class edu.uci.iotproject.detection.layer2.<a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></h3>
+<code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getLastPacket--">getLastPacket</a>, <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getMatchedPackets--">getMatchedPackets</a>, <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getMatchedPacketsCount--">getMatchedPacketsCount</a></code></li>
+</ul>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Layer2RangeMatcher-java.util.List-java.util.List-int-double-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>Layer2RangeMatcher</h4>
+<pre>public Layer2RangeMatcher(java.util.List<org.pcap4j.core.PcapPacket> lowerBound,
+ java.util.List<org.pcap4j.core.PcapPacket> upperBound,
+ int inclusionTimeMillis,
+ double eps)</pre>
+<div class="block">Create a <code>Layer2RangeMatcher</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>lowerBound</code> - The lower bound of the sequence to match against (search for).</dd>
+<dd><code>upperBound</code> - The upper bound of the sequence to match against (search for).</dd>
+<dd><code>eps</code> - The epsilon value used in the DBSCAN algorithm.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="matchPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>matchPacket</h4>
+<pre>public boolean matchPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Attempt to advance this <code>Layer2RangeMatcher</code> by matching <code>packet</code> against the packet that this
+ <code>Layer2RangeMatcher</code> expects as the next packet of the sequence it is searching for.</div>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-">matchPacket</a></code> in class <code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></code></dd>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - </dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if this <code>Layer2SequenceMatcher</code> could advance by adding <code>packet</code> to its set of
+ matched packets, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="getTargetSequencePacketCount--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getTargetSequencePacketCount</h4>
+<pre>public int getTargetSequencePacketCount()</pre>
+<div class="block"><span class="descfrmTypeLabel">Description copied from class: <code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getTargetSequencePacketCount--">Layer2AbstractMatcher</a></code></span></div>
+<div class="block">See the implementer class for the following method.</div>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getTargetSequencePacketCount--">getTargetSequencePacketCount</a></code> in class <code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></code></dd>
+</dl>
+</li>
+</ul>
+<a name="getTargetLowerBound--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getTargetLowerBound</h4>
+<pre>public java.util.List<org.pcap4j.core.PcapPacket> getTargetLowerBound()</pre>
+</li>
+</ul>
+<a name="getTargetUpperBound--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>getTargetUpperBound</h4>
+<pre>public java.util.List<org.pcap4j.core.PcapPacket> getTargetUpperBound()</pre>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<li><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Prev Class</span></a></li>
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+<div class="subTitle">edu.uci.iotproject.detection.layer2</div>
+<h2 title="Class Layer2SequenceMatcher" class="title">Class Layer2SequenceMatcher</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">edu.uci.iotproject.detection.layer2.Layer2AbstractMatcher</a></li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.detection.layer2.Layer2SequenceMatcher</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">Layer2SequenceMatcher</span>
+extends <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></pre>
+<div class="block">Attempts to detect the presence of a specific packet sequence in the set of packets provided through multiple calls
+ to <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-"><code>matchPacket(PcapPacket)</code></a>, considering only layer 2 information.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#Layer2SequenceMatcher-java.util.List-int-">Layer2SequenceMatcher</a></span>(java.util.List<org.pcap4j.core.PcapPacket> sequence,
+ int inclusionTimeMillis)</code>
+<div class="block">Create a <code>Layer2SequenceMatcher</code>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>java.util.List<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#getTargetSequence--">getTargetSequence</a></span>()</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#getTargetSequencePacketCount--">getTargetSequencePacketCount</a></span>()</code>
+<div class="block">See the implementer class for the following method.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-">matchPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Attempt to advance this <code>Layer2SequenceMatcher</code> by matching <code>packet</code> against the packet that this
+ <code>Layer2SequenceMatcher</code> expects as the next packet of the sequence it is searching for.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.edu.uci.iotproject.detection.layer2.Layer2AbstractMatcher">
+<!-- -->
+</a>
+<h3>Methods inherited from class edu.uci.iotproject.detection.layer2.<a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></h3>
+<code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getLastPacket--">getLastPacket</a>, <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getMatchedPackets--">getMatchedPackets</a>, <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getMatchedPacketsCount--">getMatchedPacketsCount</a></code></li>
+</ul>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Layer2SequenceMatcher-java.util.List-int-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>Layer2SequenceMatcher</h4>
+<pre>public Layer2SequenceMatcher(java.util.List<org.pcap4j.core.PcapPacket> sequence,
+ int inclusionTimeMillis)</pre>
+<div class="block">Create a <code>Layer2SequenceMatcher</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>sequence</code> - The sequence to match against (search for).</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="matchPacket-org.pcap4j.core.PcapPacket-">
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+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>matchPacket</h4>
+<pre>public boolean matchPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Attempt to advance this <code>Layer2SequenceMatcher</code> by matching <code>packet</code> against the packet that this
+ <code>Layer2SequenceMatcher</code> expects as the next packet of the sequence it is searching for.</div>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-">matchPacket</a></code> in class <code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></code></dd>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - </dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if this <code>Layer2SequenceMatcher</code> could advance by adding <code>packet</code> to its set of
+ matched packets, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="getTargetSequencePacketCount--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getTargetSequencePacketCount</h4>
+<pre>public int getTargetSequencePacketCount()</pre>
+<div class="block"><span class="descfrmTypeLabel">Description copied from class: <code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getTargetSequencePacketCount--">Layer2AbstractMatcher</a></code></span></div>
+<div class="block">See the implementer class for the following method.</div>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getTargetSequencePacketCount--">getTargetSequencePacketCount</a></code> in class <code><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></code></dd>
+</dl>
+</li>
+</ul>
+<a name="getTargetSequence--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>getTargetSequence</h4>
+<pre>public java.util.List<org.pcap4j.core.PcapPacket> getTargetSequence()</pre>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
+<title>Layer2SignatureDetector</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
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+<script type="text/javascript"><!--
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+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Layer2SignatureDetector";
+ }
+ }
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+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":9,"i3":10,"i4":10};
+var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
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+<li>Summary: </li>
+<li>Nested | </li>
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+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
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+<li>Detail: </li>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.detection.layer2</div>
+<h2 title="Class Layer2SignatureDetector" class="title">Class Layer2SignatureDetector</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.detection.layer2.Layer2SignatureDetector</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd><a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a>, org.pcap4j.core.PacketListener</dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">Layer2SignatureDetector</span>
+extends java.lang.Object
+implements org.pcap4j.core.PacketListener, <a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a></pre>
+<div class="block">Performs layer 2 signature detection.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#Layer2SignatureDetector-java.util.List-int-boolean-double-">Layer2SignatureDetector</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature,
+ int signatureDuration,
+ boolean isRangeBased,
+ double eps)</code> </td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#Layer2SignatureDetector-java.util.List-java.util.List-int-boolean-double-">Layer2SignatureDetector</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature,
+ java.util.List<java.util.function.Function<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a>,java.lang.Boolean>> flowFilters,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps)</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#addObserver-edu.uci.iotproject.detection.SignatureDetectorObserver-">addObserver</a></span>(<a href="../../../../../edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection">SignatureDetectorObserver</a> observer)</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#main-java.lang.String:A-">main</a></span>(java.lang.String[] args)</code> </td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">onMatch</a></span>(<a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a> clusterMatcher,
+ java.util.List<org.pcap4j.core.PcapPacket> match)</code>
+<div class="block">Callback that is invoked by an <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> whenever it detects traffic that matches an element
+ of its associated cluster.</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#removeObserver-edu.uci.iotproject.detection.SignatureDetectorObserver-">removeObserver</a></span>(<a href="../../../../../edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection">SignatureDetectorObserver</a> observer)</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Layer2SignatureDetector-java.util.List-int-boolean-double-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>Layer2SignatureDetector</h4>
+<pre>public Layer2SignatureDetector(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature,
+ int signatureDuration,
+ boolean isRangeBased,
+ double eps)</pre>
+</li>
+</ul>
+<a name="Layer2SignatureDetector-java.util.List-java.util.List-int-boolean-double-">
+<!-- -->
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+<ul class="blockListLast">
+<li class="blockList">
+<h4>Layer2SignatureDetector</h4>
+<pre>public Layer2SignatureDetector(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature,
+ java.util.List<java.util.function.Function<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a>,java.lang.Boolean>> flowFilters,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps)</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="main-java.lang.String:A-">
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+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>main</h4>
+<pre>public static void main(java.lang.String[] args)
+ throws org.pcap4j.core.PcapNativeException,
+ org.pcap4j.core.NotOpenException,
+ java.io.IOException</pre>
+<dl>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code></dd>
+<dd><code>org.pcap4j.core.NotOpenException</code></dd>
+<dd><code>java.io.IOException</code></dd>
+</dl>
+</li>
+</ul>
+<a name="gotPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>gotPacket</h4>
+<pre>public void gotPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code>gotPacket</code> in interface <code>org.pcap4j.core.PacketListener</code></dd>
+</dl>
+</li>
+</ul>
+<a name="onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">
+<!-- -->
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+<ul class="blockList">
+<li class="blockList">
+<h4>onMatch</h4>
+<pre>public void onMatch(<a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a> clusterMatcher,
+ java.util.List<org.pcap4j.core.PcapPacket> match)</pre>
+<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">ClusterMatcherObserver</a></code></span></div>
+<div class="block">Callback that is invoked by an <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> whenever it detects traffic that matches an element
+ of its associated cluster.</div>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code><a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">onMatch</a></code> in interface <code><a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a></code></dd>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>clusterMatcher</code> - The <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> that detected a match (i.e., classified traffic as
+ pertaining to its associated cluster).</dd>
+<dd><code>match</code> - The traffic that was deemed to match the cluster associated with <code>clusterMatcher</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="addObserver-edu.uci.iotproject.detection.SignatureDetectorObserver-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>addObserver</h4>
+<pre>public void addObserver(<a href="../../../../../edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection">SignatureDetectorObserver</a> observer)</pre>
+</li>
+</ul>
+<a name="removeObserver-edu.uci.iotproject.detection.SignatureDetectorObserver-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>removeObserver</h4>
+<pre>public boolean removeObserver(<a href="../../../../../edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection">SignatureDetectorObserver</a> observer)</pre>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
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+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Prev Class</span></a></li>
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+<ul class="navList" id="allclasses_navbar_bottom">
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+<!-- ======== END OF BOTTOM NAVBAR ======= -->
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+</html>
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>edu.uci.iotproject.detection.layer2</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<h1 class="bar"><a href="../../../../../edu/uci/iotproject/detection/layer2/package-summary.html" target="classFrame">edu.uci.iotproject.detection.layer2</a></h1>
+<div class="indexContainer">
+<h2 title="Classes">Classes</h2>
+<ul title="Classes">
+<li><a href="Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2" target="classFrame">Layer2AbstractMatcher</a></li>
+<li><a href="Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2" target="classFrame">Layer2ClusterMatcher</a></li>
+<li><a href="Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2" target="classFrame">Layer2RangeMatcher</a></li>
+<li><a href="Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2" target="classFrame">Layer2SequenceMatcher</a></li>
+<li><a href="Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2" target="classFrame">Layer2SignatureDetector</a></li>
+</ul>
+</div>
+</body>
+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>edu.uci.iotproject.detection.layer2</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="edu.uci.iotproject.detection.layer2";
+ }
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+ catch(err) {
+ }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
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+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li class="navBarCell1Rev">Package</li>
+<li>Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
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+<li><a href="../../../../../edu/uci/iotproject/detection/package-summary.html">Prev Package</a></li>
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+<li><a href="package-summary.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../../../allclasses-noframe.html">All Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
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+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
+<h1 title="Package" class="title">Package edu.uci.iotproject.detection.layer2</h1>
+</div>
+<div class="contentContainer">
+<ul class="blockList">
+<li class="blockList">
+<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Class Summary table, listing classes, and an explanation">
+<caption><span>Class Summary</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Class</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></td>
+<td class="colLast">
+<div class="block">Base class for layer 2 matchers (<code>Layer2SequenceMatcher</code> and <code>Layer2RangeMatcher</code>).</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2ClusterMatcher</a></td>
+<td class="colLast">
+<div class="block">Attempts to detect members of a cluster (packet sequence mutations) in layer 2 flows.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2RangeMatcher</a></td>
+<td class="colLast">
+<div class="block">Attempts to detect the presence of a specific packet sequence in the set of packets provided through multiple calls
+ to <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-"><code>Layer2RangeMatcher.matchPacket(PcapPacket)</code></a>, considering only layer 2 information.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SequenceMatcher</a></td>
+<td class="colLast">
+<div class="block">Attempts to detect the presence of a specific packet sequence in the set of packets provided through multiple calls
+ to <a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-"><code>Layer2SequenceMatcher.matchPacket(PcapPacket)</code></a>, considering only layer 2 information.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a></td>
+<td class="colLast">
+<div class="block">Performs layer 2 signature detection.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
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+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
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+</ul>
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+<li><a href="../../../../../edu/uci/iotproject/detection/package-summary.html">Prev Package</a></li>
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+<!-- ======== END OF BOTTOM NAVBAR ======= -->
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+</html>
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+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>edu.uci.iotproject.detection.layer2 Class Hierarchy</title>
+<meta name="date" content="2019-03-28">
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+<ul>
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+<h2 title="Class Layer3ClusterMatcher" class="title">Class Layer3ClusterMatcher</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li><a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">edu.uci.iotproject.detection.AbstractClusterMatcher</a></li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.detection.layer3.Layer3ClusterMatcher</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd>org.pcap4j.core.PacketListener</dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">Layer3ClusterMatcher</span>
+extends <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a>
+implements org.pcap4j.core.PacketListener</pre>
+<div class="block">Searches a traffic trace for sequences of packets "belong to" a given cluster (in other words, attempts to classify
+ traffic as pertaining to a given cluster).</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#Layer3ClusterMatcher-java.util.List-java.lang.String-int-boolean-double-edu.uci.iotproject.detection.ClusterMatcherObserver...-">Layer3ClusterMatcher</a></span>(java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> cluster,
+ java.lang.String routerWanIp,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps,
+ <a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a>... detectionObservers)</code>
+<div class="block">Create a <a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><code>Layer3ClusterMatcher</code></a>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>java.util.List<java.util.List<org.pcap4j.core.PcapPacket>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#getCluster--">getCluster</a></span>()</code>
+<div class="block">Get the cluster that describes the packet sequence that this <a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><code>Layer3ClusterMatcher</code></a> is searching for.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#performDetectionConservative--">performDetectionConservative</a></span>()</code> </td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#performDetectionRangeBased--">performDetectionRangeBased</a></span>()</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.edu.uci.iotproject.detection.AbstractClusterMatcher">
+<!-- -->
+</a>
+<h3>Methods inherited from class edu.uci.iotproject.detection.<a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a></h3>
+<code><a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html#addObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">addObserver</a>, <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html#removeObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">removeObserver</a></code></li>
+</ul>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Layer3ClusterMatcher-java.util.List-java.lang.String-int-boolean-double-edu.uci.iotproject.detection.ClusterMatcherObserver...-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>Layer3ClusterMatcher</h4>
+<pre>public Layer3ClusterMatcher(java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> cluster,
+ java.lang.String routerWanIp,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps,
+ <a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a>... detectionObservers)</pre>
+<div class="block">Create a <a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><code>Layer3ClusterMatcher</code></a>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>cluster</code> - The cluster that traffic is matched against.</dd>
+<dd><code>routerWanIp</code> - The router's WAN IP if examining traffic captured at the ISP's point of view (used for
+ determining the direction of packets).</dd>
+<dd><code>inclusionTimeMillis</code> - The packet inclusion time for signature.</dd>
+<dd><code>isRangeBased</code> - The boolean that decides if it is range-based vs. strict matching.</dd>
+<dd><code>eps</code> - The epsilon value used in the DBSCAN algorithm.</dd>
+<dd><code>detectionObservers</code> - Client code that wants to get notified whenever the <a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><code>Layer3ClusterMatcher</code></a> detects that
+ (a subset of) the examined traffic is similar to the traffic that makes up
+ <code>cluster</code>, i.e., when the examined traffic is classified as pertaining to
+ <code>cluster</code>.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="gotPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>gotPacket</h4>
+<pre>public void gotPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code>gotPacket</code> in interface <code>org.pcap4j.core.PacketListener</code></dd>
+</dl>
+</li>
+</ul>
+<a name="getCluster--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getCluster</h4>
+<pre>public java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> getCluster()</pre>
+<div class="block">Get the cluster that describes the packet sequence that this <a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><code>Layer3ClusterMatcher</code></a> is searching for.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the cluster that describes the packet sequence that this <a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><code>Layer3ClusterMatcher</code></a> is searching for.</dd>
+</dl>
+</li>
+</ul>
+<a name="performDetectionRangeBased--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>performDetectionRangeBased</h4>
+<pre>public void performDetectionRangeBased()</pre>
+</li>
+</ul>
+<a name="performDetectionConservative--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>performDetectionConservative</h4>
+<pre>public void performDetectionConservative()</pre>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
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+<meta name="date" content="2019-03-28">
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+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.detection.layer3</div>
+<h2 title="Class Layer3SignatureDetector" class="title">Class Layer3SignatureDetector</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.detection.layer3.Layer3SignatureDetector</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd><a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a>, org.pcap4j.core.PacketListener</dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">Layer3SignatureDetector</span>
+extends java.lang.Object
+implements org.pcap4j.core.PacketListener, <a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a></pre>
+<div class="block">Detects an event signature that spans one or multiple TCP connections.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#Layer3SignatureDetector-java.util.List-java.lang.String-int-boolean-double-">Layer3SignatureDetector</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature,
+ java.lang.String routerWanIp,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps)</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#addObserver-edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver-">addObserver</a></span>(edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver observer)</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#main-java.lang.String:A-">main</a></span>(java.lang.String[] args)</code> </td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">onMatch</a></span>(<a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a> clusterMatcher,
+ java.util.List<org.pcap4j.core.PcapPacket> match)</code>
+<div class="block">Callback that is invoked by an <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> whenever it detects traffic that matches an element
+ of its associated cluster.</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>static java.util.List<<a href="../../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#removeDuplicates-java.util.List-">removeDuplicates</a></span>(java.util.List<<a href="../../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>> listUserAction)</code>
+<div class="block">Remove duplicates in <code>List</code> of <code>UserAction</code> objects.</div>
+</td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#removeObserver-edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver-">removeObserver</a></span>(edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver observer)</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Layer3SignatureDetector-java.util.List-java.lang.String-int-boolean-double-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>Layer3SignatureDetector</h4>
+<pre>public Layer3SignatureDetector(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> searchedSignature,
+ java.lang.String routerWanIp,
+ int inclusionTimeMillis,
+ boolean isRangeBased,
+ double eps)</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="main-java.lang.String:A-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>main</h4>
+<pre>public static void main(java.lang.String[] args)
+ throws org.pcap4j.core.PcapNativeException,
+ org.pcap4j.core.NotOpenException,
+ java.io.IOException</pre>
+<dl>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code></dd>
+<dd><code>org.pcap4j.core.NotOpenException</code></dd>
+<dd><code>java.io.IOException</code></dd>
+</dl>
+</li>
+</ul>
+<a name="removeDuplicates-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>removeDuplicates</h4>
+<pre>public static java.util.List<<a href="../../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>> removeDuplicates(java.util.List<<a href="../../../../../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a>> listUserAction)</pre>
+<div class="block">Remove duplicates in <code>List</code> of <code>UserAction</code> objects. We need to clean this up for user actions
+ that appear multiple times.
+ TODO: This static method is probably just for temporary and we could get rid of this after we clean up
+ TODO: the pipeline</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>listUserAction</code> - A <code>List</code> of <code>UserAction</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="addObserver-edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>addObserver</h4>
+<pre>public void addObserver(edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver observer)</pre>
+</li>
+</ul>
+<a name="removeObserver-edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>removeObserver</h4>
+<pre>public boolean removeObserver(edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver observer)</pre>
+</li>
+</ul>
+<a name="gotPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>gotPacket</h4>
+<pre>public void gotPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code>gotPacket</code> in interface <code>org.pcap4j.core.PacketListener</code></dd>
+</dl>
+</li>
+</ul>
+<a name="onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>onMatch</h4>
+<pre>public void onMatch(<a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a> clusterMatcher,
+ java.util.List<org.pcap4j.core.PcapPacket> match)</pre>
+<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">ClusterMatcherObserver</a></code></span></div>
+<div class="block">Callback that is invoked by an <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> whenever it detects traffic that matches an element
+ of its associated cluster.</div>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code><a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">onMatch</a></code> in interface <code><a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a></code></dd>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>clusterMatcher</code> - The <a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> that detected a match (i.e., classified traffic as
+ pertaining to its associated cluster).</dd>
+<dd><code>match</code> - The traffic that was deemed to match the cluster associated with <code>clusterMatcher</code>.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><span class="typeNameLink">Prev Class</span></a></li>
+<li>Next Class</li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../../index.html?edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" target="_top">Frames</a></li>
+<li><a href="Layer3SignatureDetector.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_bottom">
+<li><a href="../../../../../allclasses-noframe.html">All Classes</a></li>
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>edu.uci.iotproject.detection.layer3</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<h1 class="bar"><a href="../../../../../edu/uci/iotproject/detection/layer3/package-summary.html" target="classFrame">edu.uci.iotproject.detection.layer3</a></h1>
+<div class="indexContainer">
+<h2 title="Classes">Classes</h2>
+<ul title="Classes">
+<li><a href="Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3" target="classFrame">Layer3ClusterMatcher</a></li>
+<li><a href="Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3" target="classFrame">Layer3SignatureDetector</a></li>
+</ul>
+</div>
+</body>
+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
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+<!-- ========= START OF TOP NAVBAR ======= -->
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+<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Class Summary table, listing classes, and an explanation">
+<caption><span>Class Summary</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Class</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3">Layer3ClusterMatcher</a></td>
+<td class="colLast">
+<div class="block">Searches a traffic trace for sequences of packets "belong to" a given cluster (in other words, attempts to classify
+ traffic as pertaining to a given cluster).</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></td>
+<td class="colLast">
+<div class="block">Detects an event signature that spans one or multiple TCP connections.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
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+<h2 title="Class Hierarchy">Class Hierarchy</h2>
+<ul>
+<li type="circle">java.lang.Object
+<ul>
+<li type="circle">edu.uci.iotproject.detection.<a href="../../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><span class="typeNameLink">AbstractClusterMatcher</span></a>
+<ul>
+<li type="circle">edu.uci.iotproject.detection.layer3.<a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><span class="typeNameLink">Layer3ClusterMatcher</span></a> (implements org.pcap4j.core.PacketListener)</li>
+</ul>
+</li>
+<li type="circle">edu.uci.iotproject.detection.layer3.<a href="../../../../../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3"><span class="typeNameLink">Layer3SignatureDetector</span></a> (implements edu.uci.iotproject.detection.<a href="../../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a>, org.pcap4j.core.PacketListener)</li>
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+<!-- NewPage -->
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+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
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+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
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+<div class="indexContainer">
+<h2 title="Interfaces">Interfaces</h2>
+<ul title="Interfaces">
+<li><a href="ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection" target="classFrame"><span class="interfaceName">ClusterMatcherObserver</span></a></li>
+<li><a href="SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection" target="classFrame"><span class="interfaceName">SignatureDetectorObserver</span></a></li>
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+<li><a href="AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection" target="classFrame">AbstractSignatureDetector</a></li>
+</ul>
+</div>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
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+<div class="contentContainer">
+<ul class="blockList">
+<li class="blockList">
+<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Interface Summary table, listing interfaces, and an explanation">
+<caption><span>Interface Summary</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Interface</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a></td>
+<td class="colLast">
+<div class="block">Interface used by client code to register for receiving a notification whenever an <a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a>
+ detects traffic that matches an element of its associated cluster.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection">SignatureDetectorObserver</a></td>
+<td class="colLast">
+<div class="block">Used for registering for notifications from a signature detector.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList">
+<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Class Summary table, listing classes, and an explanation">
+<caption><span>Class Summary</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Class</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a></td>
+<td class="colLast">
+<div class="block">Base class for classes that search a traffic trace for sequences of packets that "belong to" a given cluster (in
+ other words, classes that attempt to classify traffic as pertaining to a given cluster).</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection">AbstractSignatureDetector</a></td>
+<td class="colLast">
+<div class="block">TODO add class documentation.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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+<!-- NewPage -->
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+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>edu.uci.iotproject.detection Class Hierarchy</title>
+<meta name="date" content="2019-03-28">
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+ if (location.href.indexOf('is-external=true') == -1) {
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+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
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+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
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+<div class="header">
+<h1 class="title">Hierarchy For Package edu.uci.iotproject.detection</h1>
+<span class="packageHierarchyLabel">Package Hierarchies:</span>
+<ul class="horizontal">
+<li><a href="../../../../overview-tree.html">All Packages</a></li>
+</ul>
+</div>
+<div class="contentContainer">
+<h2 title="Class Hierarchy">Class Hierarchy</h2>
+<ul>
+<li type="circle">java.lang.Object
+<ul>
+<li type="circle">edu.uci.iotproject.detection.<a href="../../../../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><span class="typeNameLink">AbstractClusterMatcher</span></a></li>
+<li type="circle">edu.uci.iotproject.detection.<a href="../../../../edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection"><span class="typeNameLink">AbstractSignatureDetector</span></a> (implements edu.uci.iotproject.detection.<a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a>)</li>
+</ul>
+</li>
+</ul>
+<h2 title="Interface Hierarchy">Interface Hierarchy</h2>
+<ul>
+<li type="circle">edu.uci.iotproject.detection.<a href="../../../../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection"><span class="typeNameLink">ClusterMatcherObserver</span></a></li>
+<li type="circle">edu.uci.iotproject.detection.<a href="../../../../edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection"><span class="typeNameLink">SignatureDetectorObserver</span></a></li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li>Class</li>
+<li class="navBarCell1Rev">Tree</li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
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+<ul class="navList" id="allclasses_navbar_bottom">
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+</ul>
+<div>
+<script type="text/javascript"><!--
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+ if(window==top) {
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+ }
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+ //-->
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+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
+</body>
+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
+<title>DetectionResultsAnalyzer</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="DetectionResultsAnalyzer";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":9};
+var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li>Prev Class</li>
+<li><a href="../../../../edu/uci/iotproject/evaluation/SanitySignatureGenerator.html" title="class in edu.uci.iotproject.evaluation"><span class="typeNameLink">Next Class</span></a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../index.html?edu/uci/iotproject/evaluation/DetectionResultsAnalyzer.html" target="_top">Frames</a></li>
+<li><a href="DetectionResultsAnalyzer.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
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+</ul>
+<div>
+<script type="text/javascript"><!--
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+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
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+<h2 title="Class DetectionResultsAnalyzer" class="title">Class DetectionResultsAnalyzer</h2>
+</div>
+<div class="contentContainer">
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+<li>java.lang.Object</li>
+<li>
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+<pre>public class <span class="typeNameLabel">DetectionResultsAnalyzer</span>
+extends java.lang.Object</pre>
+<div class="block">Utility for comparing detected events to logged (actual) events.</div>
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+<dl>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.io.IOException</code></dd>
+</dl>
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+<h2 title="Class SanitySignatureGenerator" class="title">Class SanitySignatureGenerator</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
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+<pre>public class <span class="typeNameLabel">SanitySignatureGenerator</span>
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+<div class="block">Hacky utility for producing a sanity signature for negative test sets.
+ <p>
+ More precisely, given information about packet lengths and packet directions known to be present in an input trace,
+ this class locates the first occurrence of a matching sequence in the input trace and outputs it to a file in the
+ signature format (i.e., a <code>List<List<List<PcapPacket>>></code>.
+ </p>
+ <p>
+ Note: can only produce simplistic signatures, i.e., a signature that is a <em>single</em> packet sequence that
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+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/evaluation/SanitySignatureGenerator.html#SanitySignatureGenerator--">SanitySignatureGenerator</a></span>()</code> </td>
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+<pre>public static void main(java.lang.String[] args)
+ throws org.pcap4j.core.PcapNativeException,
+ org.pcap4j.core.NotOpenException</pre>
+<dl>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code></dd>
+<dd><code>org.pcap4j.core.NotOpenException</code></dd>
+</dl>
+</li>
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+<div class="block">Utility for comparing detected events to logged (actual) events.</div>
+</td>
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+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/evaluation/SanitySignatureGenerator.html" title="class in edu.uci.iotproject.evaluation">SanitySignatureGenerator</a></td>
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+<div class="block">Hacky utility for producing a sanity signature for negative test sets.</div>
+</td>
+</tr>
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+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
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+ }
+//-->
+var methods = {"i0":9,"i1":9,"i2":9};
+var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],8:["t4","Concrete Methods"]};
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+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.io</div>
+<h2 title="Class LiveCapture" class="title">Class LiveCapture</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.io.LiveCapture</li>
+</ul>
+</li>
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+<div class="description">
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+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">LiveCapture</span>
+extends java.lang.Object</pre>
+<div class="block">Utility methods for setting up a <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that reads live traffic from a network interface card.</div>
+</li>
+</ul>
+</div>
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+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/LiveCapture.html#LiveCapture--">LiveCapture</a></span>()</code> </td>
+</tr>
+</table>
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+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>static <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io">PcapHandleReader</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/LiveCapture.html#fromCliNicSelection-org.pcap4j.core.PacketListener...-">fromCliNicSelection</a></span>(org.pcap4j.core.PacketListener... listeners)</code>
+<div class="block">Prompts the user to pick a Network Interface Card (NIC) for which live traffic is to be captured, then creates a
+ <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that is ready to start capturing live traffic from that NIC.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>static <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io">PcapHandleReader</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/LiveCapture.html#fromNic-org.pcap4j.core.PcapNetworkInterface-org.pcap4j.core.PacketListener...-">fromNic</a></span>(org.pcap4j.core.PcapNetworkInterface networkInterface,
+ org.pcap4j.core.PacketListener... listeners)</code>
+<div class="block">Creates a <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that is ready to start capturing live traffic from the provided Network
+ Interface Card (NIC).</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/LiveCapture.html#main-java.lang.String:A-">main</a></span>(java.lang.String[] args)</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="LiveCapture--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>LiveCapture</h4>
+<pre>public LiveCapture()</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="main-java.lang.String:A-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>main</h4>
+<pre>public static void main(java.lang.String[] args)
+ throws org.pcap4j.core.PcapNativeException,
+ org.pcap4j.core.NotOpenException,
+ java.lang.InterruptedException</pre>
+<dl>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code></dd>
+<dd><code>org.pcap4j.core.NotOpenException</code></dd>
+<dd><code>java.lang.InterruptedException</code></dd>
+</dl>
+</li>
+</ul>
+<a name="fromCliNicSelection-org.pcap4j.core.PacketListener...-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>fromCliNicSelection</h4>
+<pre>public static <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io">PcapHandleReader</a> fromCliNicSelection(org.pcap4j.core.PacketListener... listeners)
+ throws org.pcap4j.core.PcapNativeException</pre>
+<div class="block">Prompts the user to pick a Network Interface Card (NIC) for which live traffic is to be captured, then creates a
+ <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that is ready to start capturing live traffic from that NIC.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>listeners</code> - One or more <code>PacketListener</code>s to which packets read from the NIC will be delivered.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that is ready to start capturing live traffic from the selected NIC or
+ <code>null</code> if no NICs can be found.</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code> - if an error occurs in the pcap native library.</dd>
+</dl>
+</li>
+</ul>
+<a name="fromNic-org.pcap4j.core.PcapNetworkInterface-org.pcap4j.core.PacketListener...-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>fromNic</h4>
+<pre>public static <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io">PcapHandleReader</a> fromNic(org.pcap4j.core.PcapNetworkInterface networkInterface,
+ org.pcap4j.core.PacketListener... listeners)
+ throws org.pcap4j.core.PcapNativeException</pre>
+<div class="block">Creates a <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that is ready to start capturing live traffic from the provided Network
+ Interface Card (NIC).</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>networkInterface</code> - The target NIC.</dd>
+<dd><code>listeners</code> - One or more <code>PacketListener</code>s to which packets read from the NIC will be delivered.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that is ready to start capturing live traffic from the provided NIC.</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code> - if an error occurs in the pcap native library.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
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+<!-- NewPage -->
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+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
+<title>PcapHandleReader</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
+</head>
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+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="PcapHandleReader";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
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+<div>JavaScript is disabled on your browser.</div>
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+<div class="subTitle">edu.uci.iotproject.io</div>
+<h2 title="Class PcapHandleReader" class="title">Class PcapHandleReader</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.io.PcapHandleReader</li>
+</ul>
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+<br>
+<pre>public class <span class="typeNameLabel">PcapHandleReader</span>
+extends java.lang.Object</pre>
+<div class="block">Reads packets from a <code>PcapHandle</code> (online or offline) and delivers those packets that pass the test exercised
+ by the provided <a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis"><code>PcapPacketFilter</code></a> onto the provided <code>PacketListener</code>s.</div>
+</li>
+</ul>
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+<li class="blockList">
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+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html#PcapHandleReader-org.pcap4j.core.PcapHandle-edu.uci.iotproject.analysis.PcapPacketFilter-org.pcap4j.core.PacketListener...-">PcapHandleReader</a></span>(org.pcap4j.core.PcapHandle handle,
+ <a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis">PcapPacketFilter</a> packetFilter,
+ org.pcap4j.core.PacketListener... packetListeners)</code>
+<div class="block">Create a <code>PcapHandleReader</code>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
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+<!-- -->
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+<h3>Method Summary</h3>
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+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html#hasTerminated--">hasTerminated</a></span>()</code>
+<div class="block">Checks if this <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> has gracefully terminated, i.e., that the wrapped <code>PcapHandle</code> has
+ been closed.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html#readFromHandle--">readFromHandle</a></span>()</code>
+<div class="block">Start reading (and filtering) packets from the provided <code>PcapHandle</code>.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html#stopReading--">stopReading</a></span>()</code>
+<div class="block">Stop reading from the wrapped <code>PcapHandle</code>.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
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+<!-- ========= CONSTRUCTOR DETAIL ======== -->
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+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="PcapHandleReader-org.pcap4j.core.PcapHandle-edu.uci.iotproject.analysis.PcapPacketFilter-org.pcap4j.core.PacketListener...-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>PcapHandleReader</h4>
+<pre>public PcapHandleReader(org.pcap4j.core.PcapHandle handle,
+ <a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis">PcapPacketFilter</a> packetFilter,
+ org.pcap4j.core.PacketListener... packetListeners)</pre>
+<div class="block">Create a <code>PcapHandleReader</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>handle</code> - An <em>open</em> <code>PcapHandle</code> that packets will be read from.</dd>
+<dd><code>packetFilter</code> - A <a href="../../../../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis"><code>PcapPacketFilter</code></a> that dictates which of the packets read from <code>handle</code> should
+ be delivered to <code>packetListeners</code>. Note that while a value of <code>null</code> is not
+ permitted here, the caller can instead simply provide an implementation that always returns
+ <code>true</code> if they want to include all packets read from <code>handle</code>.</dd>
+<dd><code>packetListeners</code> - One or more <code>PacketListener</code>s to which those packets read from <code>handle</code> that
+ pass through <code>packetFilter</code> are delivered.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
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+<a name="readFromHandle--">
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+<li class="blockList">
+<h4>readFromHandle</h4>
+<pre>public void readFromHandle()
+ throws org.pcap4j.core.PcapNativeException,
+ org.pcap4j.core.NotOpenException</pre>
+<div class="block">Start reading (and filtering) packets from the provided <code>PcapHandle</code>.</div>
+<dl>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>org.pcap4j.core.PcapNativeException</code> - if an error occurs in the pcap native library.</dd>
+<dd><code>org.pcap4j.core.NotOpenException</code> - if the provided <code>PcapHandle</code> is not open.</dd>
+</dl>
+</li>
+</ul>
+<a name="stopReading--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>stopReading</h4>
+<pre>public void stopReading()</pre>
+<div class="block">Stop reading from the wrapped <code>PcapHandle</code>. Note that this call only <em>initiates</em> the shutdown by
+ setting a termination flag. Shutdown will be deferred until the time at which this flag can be checked by
+ <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html#readFromHandle--"><code>readFromHandle()</code></a>. For example, if <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html#readFromHandle--"><code>readFromHandle()</code></a> is currently in the middle of a blocking
+ call to <code>PcapHandle.getNextPacketEx()</code>, shutdown will not occur until the next packet is returned from the
+ wrapped <code>PcapHandle</code> or its read timeout expires. Use <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html#hasTerminated--"><code>hasTerminated()</code></a> to check if the shutdown
+ has completed.</div>
+</li>
+</ul>
+<a name="hasTerminated--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>hasTerminated</h4>
+<pre>public boolean hasTerminated()</pre>
+<div class="block">Checks if this <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> has gracefully terminated, i.e., that the wrapped <code>PcapHandle</code> has
+ been closed.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if this <a href="../../../../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> has terminated, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
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+<div class="header">
+<div class="subTitle">edu.uci.iotproject.io</div>
+<h2 title="Class PrintWriterUtils" class="title">Class PrintWriterUtils</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.io.PrintWriterUtils</li>
+</ul>
+</li>
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+<br>
+<pre>public final class <span class="typeNameLabel">PrintWriterUtils</span>
+extends java.lang.Object</pre>
+<div class="block">Utility methods for (jointly) printing to a <code>PrintWriter</code> (and standard output).</div>
+</li>
+</ul>
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+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/PrintWriterUtils.html#print-java.lang.Object-java.io.PrintWriter-boolean-">print</a></span>(java.lang.Object line,
+ java.io.PrintWriter writer,
+ boolean duplicateToStdOut)</code>
+<div class="block">Invoke <code>PrintWriter.println(Object)</code> passing <code>line</code> as argument while also printing <code>line</code> to
+ standard output if <code>duplicateToStdOut</code> is <code>true</code>.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/PrintWriterUtils.html#printEmptyLine-java.io.PrintWriter-boolean-">printEmptyLine</a></span>(java.io.PrintWriter writer,
+ boolean duplicateToStdOut)</code>
+<div class="block">Make writer (and standard output, if <code>duplicateToStdOut</code> is <code>true</code>) print an empty line.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/PrintWriterUtils.html#println-java.lang.Object-java.io.PrintWriter-boolean-">println</a></span>(java.lang.Object line,
+ java.io.PrintWriter writer,
+ boolean duplicateToStdOut)</code>
+<div class="block">Invoke <code>PrintWriter.println(Object)</code> passing <code>line</code> as argument while also printing <code>line</code> to
+ standard output if <code>duplicateToStdOut</code> is <code>true</code>.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
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+<h3>Methods inherited from class java.lang.Object</h3>
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+<h4>println</h4>
+<pre>public static void println(java.lang.Object line,
+ java.io.PrintWriter writer,
+ boolean duplicateToStdOut)</pre>
+<div class="block">Invoke <code>PrintWriter.println(Object)</code> passing <code>line</code> as argument while also printing <code>line</code> to
+ standard output if <code>duplicateToStdOut</code> is <code>true</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>line</code> - The line to be printed.</dd>
+<dd><code>writer</code> - The <code>PrintWriter</code> that is to print <code>line</code>.</dd>
+<dd><code>duplicateToStdOut</code> - Set to <code>true</code> if <code>line</code> should also be printed in standard output.</dd>
+</dl>
+</li>
+</ul>
+<a name="print-java.lang.Object-java.io.PrintWriter-boolean-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>print</h4>
+<pre>public static void print(java.lang.Object line,
+ java.io.PrintWriter writer,
+ boolean duplicateToStdOut)</pre>
+<div class="block">Invoke <code>PrintWriter.println(Object)</code> passing <code>line</code> as argument while also printing <code>line</code> to
+ standard output if <code>duplicateToStdOut</code> is <code>true</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>line</code> - The line to be printed.</dd>
+<dd><code>writer</code> - The <code>PrintWriter</code> that is to print <code>line</code>.</dd>
+<dd><code>duplicateToStdOut</code> - Set to <code>true</code> if <code>line</code> should also be printed in standard output.</dd>
+</dl>
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+<div class="block">Make writer (and standard output, if <code>duplicateToStdOut</code> is <code>true</code>) print an empty line.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>writer</code> - The writer that <code>PrintWriter.println()</code> is to be invoked on.</dd>
+<dd><code>duplicateToStdOut</code> - If <code>true</code>, prints an empty line to standard output.</dd>
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+<div class="subTitle">edu.uci.iotproject.io</div>
+<h2 title="Class TriggerTimesFileReader" class="title">Class TriggerTimesFileReader</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.io.TriggerTimesFileReader</li>
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+<br>
+<pre>public class <span class="typeNameLabel">TriggerTimesFileReader</span>
+extends java.lang.Object</pre>
+<div class="block">Parses a file to obtain the timestamps at which the smart plug was toggled on/off.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- =========== FIELD SUMMARY =========== -->
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+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Field and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><code>static java.time.ZoneId</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/TriggerTimesFileReader.html#ZONE_ID_BUDAPEST">ZONE_ID_BUDAPEST</a></span></code> </td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><code>static java.time.ZoneId</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/TriggerTimesFileReader.html#ZONE_ID_LOS_ANGELES">ZONE_ID_LOS_ANGELES</a></span></code> </td>
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+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/TriggerTimesFileReader.html#TriggerTimesFileReader--">TriggerTimesFileReader</a></span>()</code> </td>
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+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>java.time.Instant</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/TriggerTimesFileReader.html#parseTriggerTimestamp-java.lang.String-boolean-">parseTriggerTimestamp</a></span>(java.lang.String timestampStr,
+ boolean _24hFormat)</code>
+<div class="block">Parses a timestamp string to an <code>Instant</code> (UTC).</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>java.util.List<java.time.Instant></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/io/TriggerTimesFileReader.html#readTriggerTimes-java.lang.String-boolean-">readTriggerTimes</a></span>(java.lang.String fileName,
+ boolean _24hFormat)</code>
+<div class="block">Reads a file with trigger timestamps and parses the timestamps into <code>Instant</code>s using the rules specified
+ by <a href="../../../../edu/uci/iotproject/io/TriggerTimesFileReader.html#parseTriggerTimestamp-java.lang.String-boolean-"><code>parseTriggerTimestamp(String, boolean)</code></a>.</div>
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+<li class="blockList">
+<h4>ZONE_ID_LOS_ANGELES</h4>
+<pre>public static final java.time.ZoneId ZONE_ID_LOS_ANGELES</pre>
+</li>
+</ul>
+<a name="ZONE_ID_BUDAPEST">
+<!-- -->
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+<h4>ZONE_ID_BUDAPEST</h4>
+<pre>public static final java.time.ZoneId ZONE_ID_BUDAPEST</pre>
+</li>
+</ul>
+</li>
+</ul>
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+<h4>TriggerTimesFileReader</h4>
+<pre>public TriggerTimesFileReader()</pre>
+</li>
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+<!-- ============ METHOD DETAIL ========== -->
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+<h4>readTriggerTimes</h4>
+<pre>public java.util.List<java.time.Instant> readTriggerTimes(java.lang.String fileName,
+ boolean _24hFormat)</pre>
+<div class="block">Reads a file with trigger timestamps and parses the timestamps into <code>Instant</code>s using the rules specified
+ by <a href="../../../../edu/uci/iotproject/io/TriggerTimesFileReader.html#parseTriggerTimestamp-java.lang.String-boolean-"><code>parseTriggerTimestamp(String, boolean)</code></a>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>fileName</code> - The absolute path to the file with trigger timestamps.</dd>
+<dd><code>_24hFormat</code> - <code>true</code> if the timestamps in the file are in 24 hour format, <code>false</code> if they are in
+ AM/PM format.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A containing the trigger timestamps represented as <code>Instant</code>s.</dd>
+</dl>
+</li>
+</ul>
+<a name="parseTriggerTimestamp-java.lang.String-boolean-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>parseTriggerTimestamp</h4>
+<pre>public java.time.Instant parseTriggerTimestamp(java.lang.String timestampStr,
+ boolean _24hFormat)</pre>
+<div class="block">Parses a timestamp string to an <code>Instant</code> (UTC). Assumes timestamps are LA time.
+ Format is expected to be either "MM/dd/uuuu HH:mm:ss" or "MM/dd/uuuu h:mm:ss a".</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>timestampStr</code> - The string containing a date-time timestamp for LA's timezone.</dd>
+<dd><code>_24hFormat</code> - <code>true</code> if the time in <code>timestampStr</code> is given in 24 hour format, <code>false</code> if
+ it is given in AM/PM format.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>An <code>Instant</code> representation of the parsed timestamp. Note that the <code>Instant</code> marks a point on
+ the timeline in UTC. Use <code>Instant.atZone(ZoneId)</code> to convert to the corresponding time in a given
+ timezone.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
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+<h2 title="Class MacLayerFlowPattern" class="title">Class MacLayerFlowPattern</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.maclayer.MacLayerFlowPattern</li>
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+<br>
+<pre>public class <span class="typeNameLabel">MacLayerFlowPattern</span>
+extends java.lang.Object</pre>
+<div class="block">TODO create base class for FlowPattern and derive MacLayer, TCP/IP layer versions from that.</div>
+</li>
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+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#MacLayerFlowPattern-java.lang.String-java.lang.String-java.util.List-">MacLayerFlowPattern</a></span>(java.lang.String patternId,
+ java.lang.String macPrefix,
+ java.util.List<java.lang.Integer> packetLengthSequence)</code> </td>
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+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#getLength--">getLength</a></span>()</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>byte[]</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#getMacPrefixRawBytes--">getMacPrefixRawBytes</a></span>()</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>java.util.List<java.lang.Integer></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#getPacketLengthSequence--">getPacketLengthSequence</a></span>()</code> </td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#getPatternId--">getPatternId</a></span>()</code> </td>
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+<h4>MacLayerFlowPattern</h4>
+<pre>public MacLayerFlowPattern(java.lang.String patternId,
+ java.lang.String macPrefix,
+ java.util.List<java.lang.Integer> packetLengthSequence)</pre>
+</li>
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+<h4>getPatternId</h4>
+<pre>public java.lang.String getPatternId()</pre>
+</li>
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+<pre>public byte[] getMacPrefixRawBytes()</pre>
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+<h4>getPacketLengthSequence</h4>
+<pre>public java.util.List<java.lang.Integer> getPacketLengthSequence()</pre>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.maclayer</div>
+<h2 title="Class MacLayerFlowPatternFinder" class="title">Class MacLayerFlowPatternFinder</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.maclayer.MacLayerFlowPatternFinder</li>
+</ul>
+</li>
+</ul>
+<div class="description">
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+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">MacLayerFlowPatternFinder</span>
+extends java.lang.Object</pre>
+<div class="block">Performs a search for <a href="../../../../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject"><code>FlowPattern</code></a>
+ TODO: May want to create an abstract FlowPatternFinder and then derive MacLayer, TcpipLayer FlowPatternFinders from that one.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
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+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html#MacLayerFlowPatternFinder-org.pcap4j.core.PcapHandle-edu.uci.iotproject.maclayer.MacLayerFlowPattern-">MacLayerFlowPatternFinder</a></span>(org.pcap4j.core.PcapHandle pcap,
+ <a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPattern</a> pattern)</code> </td>
+</tr>
+</table>
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+<!-- ========== METHOD SUMMARY =========== -->
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+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html#findFlowPattern--">findFlowPattern</a></span>()</code> </td>
+</tr>
+</table>
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+<!-- -->
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+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
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+<h3>Constructor Detail</h3>
+<a name="MacLayerFlowPatternFinder-org.pcap4j.core.PcapHandle-edu.uci.iotproject.maclayer.MacLayerFlowPattern-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>MacLayerFlowPatternFinder</h4>
+<pre>public MacLayerFlowPatternFinder(org.pcap4j.core.PcapHandle pcap,
+ <a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPattern</a> pattern)</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
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+<h3>Method Detail</h3>
+<a name="findFlowPattern--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>findFlowPattern</h4>
+<pre>public void findFlowPattern()</pre>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
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+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>edu.uci.iotproject.maclayer</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
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+<h1 class="bar"><a href="../../../../edu/uci/iotproject/maclayer/package-summary.html" target="classFrame">edu.uci.iotproject.maclayer</a></h1>
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+<ul title="Classes">
+<li><a href="MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer" target="classFrame">MacLayerFlowPattern</a></li>
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+</ul>
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+<th class="colFirst" scope="col">Class</th>
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+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPattern</a></td>
+<td class="colLast">
+<div class="block">TODO create base class for FlowPattern and derive MacLayer, TCP/IP layer versions from that.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPatternFinder</a></td>
+<td class="colLast">
+<div class="block">Performs a search for <a href="../../../../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject"><code>FlowPattern</code></a>
+ TODO: May want to create an abstract FlowPatternFinder and then derive MacLayer, TcpipLayer FlowPatternFinders from that one.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
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+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
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+<li type="circle">java.lang.Object
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+<li type="circle">edu.uci.iotproject.maclayer.<a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer"><span class="typeNameLink">MacLayerFlowPattern</span></a></li>
+<li type="circle">edu.uci.iotproject.maclayer.<a href="../../../../edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html" title="class in edu.uci.iotproject.maclayer"><span class="typeNameLink">MacLayerFlowPatternFinder</span></a></li>
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+<th class="colLast" scope="col">Description</th>
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+<td class="colFirst"><a href="../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a></td>
+<td class="colLast">
+<div class="block">This is a class that does DNS mapping.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></td>
+<td class="colLast">
+<div class="block">TODO add class documentation.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../edu/uci/iotproject/SignatureGenerator.html" title="class in edu.uci.iotproject">SignatureGenerator</a></td>
+<td class="colLast">
+<div class="block">This is a system that reads PCAP files to compare
+ patterns of DNS hostnames, packet sequences, and packet
+ lengths with training data to determine certain events
+ or actions for smart home devices.</div>
+</td>
+</tr>
+</tbody>
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+<div class="contentContainer">
+<h2 title="Class Hierarchy">Class Hierarchy</h2>
+<ul>
+<li type="circle">java.lang.Object
+<ul>
+<li type="circle">edu.uci.iotproject.<a href="../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><span class="typeNameLink">DnsMap</span></a> (implements org.pcap4j.core.PacketListener)</li>
+<li type="circle">edu.uci.iotproject.<a href="../../../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject"><span class="typeNameLink">FlowPattern</span></a></li>
+<li type="circle">edu.uci.iotproject.<a href="../../../edu/uci/iotproject/SignatureGenerator.html" title="class in edu.uci.iotproject"><span class="typeNameLink">SignatureGenerator</span></a></li>
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+<div class="subTitle">edu.uci.iotproject.test</div>
+<h2 title="Class SequenceAlignmentTest" class="title">Class SequenceAlignmentTest</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.test.SequenceAlignmentTest</li>
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+<br>
+<pre>public class <span class="typeNameLabel">SequenceAlignmentTest</span>
+extends java.lang.Object</pre>
+<div class="block">Tests the implementation of <a href="../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>.</div>
+</li>
+</ul>
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+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#SequenceAlignmentTest--">SequenceAlignmentTest</a></span>()</code> </td>
+</tr>
+</table>
+</li>
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+<!-- ========== METHOD SUMMARY =========== -->
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+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#ameAlignedWithNameShouldBe2--">ameAlignedWithNameShouldBe2</a></span>()</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#emanAlignedWithNameShouldBe6--">emanAlignedWithNameShouldBe6</a></span>()</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#fameAlignedWithNameShouldBe1--">fameAlignedWithNameShouldBe1</a></span>()</code> </td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#initialize--">initialize</a></span>()</code> </td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#kleinbergExampleOptAlignmentCostShouldBe6--">kleinbergExampleOptAlignmentCostShouldBe6</a></span>()</code> </td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#mAlignedWithNameShouldBe6--">mAlignedWithNameShouldBe6</a></span>()</code> </td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#meAlignedWithNameShouldBe4--">meAlignedWithNameShouldBe4</a></span>()</code> </td>
+</tr>
+<tr id="i7" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#meanAlignedWithEmptyStringShouldBe8--">meanAlignedWithEmptyStringShouldBe8</a></span>()</code> </td>
+</tr>
+<tr id="i8" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#naemAlignedWithNameShouldBe4--">naemAlignedWithNameShouldBe4</a></span>()</code> </td>
+</tr>
+<tr id="i9" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#nameAlignedWithNameShouldBe0--">nameAlignedWithNameShouldBe0</a></span>()</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
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+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
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+</li>
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+<h4>SequenceAlignmentTest</h4>
+<pre>public SequenceAlignmentTest()</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
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+<li class="blockList">
+<h4>initialize</h4>
+<pre>public void initialize()</pre>
+</li>
+</ul>
+<a name="kleinbergExampleOptAlignmentCostShouldBe6--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>kleinbergExampleOptAlignmentCostShouldBe6</h4>
+<pre>public void kleinbergExampleOptAlignmentCostShouldBe6()</pre>
+</li>
+</ul>
+<a name="meanAlignedWithEmptyStringShouldBe8--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>meanAlignedWithEmptyStringShouldBe8</h4>
+<pre>public void meanAlignedWithEmptyStringShouldBe8()</pre>
+</li>
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+<a name="mAlignedWithNameShouldBe6--">
+<!-- -->
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+<ul class="blockList">
+<li class="blockList">
+<h4>mAlignedWithNameShouldBe6</h4>
+<pre>public void mAlignedWithNameShouldBe6()</pre>
+</li>
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+<!-- -->
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+<ul class="blockList">
+<li class="blockList">
+<h4>meAlignedWithNameShouldBe4</h4>
+<pre>public void meAlignedWithNameShouldBe4()</pre>
+</li>
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+<!-- -->
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+<ul class="blockList">
+<li class="blockList">
+<h4>ameAlignedWithNameShouldBe2</h4>
+<pre>public void ameAlignedWithNameShouldBe2()</pre>
+</li>
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+<a name="fameAlignedWithNameShouldBe1--">
+<!-- -->
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+<ul class="blockList">
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+<h4>fameAlignedWithNameShouldBe1</h4>
+<pre>public void fameAlignedWithNameShouldBe1()</pre>
+</li>
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+<div class="subTitle">edu.uci.iotproject.trafficreassembly.layer2</div>
+<h2 title="Class Layer2Flow" class="title">Class Layer2Flow</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
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+<pre>public class <span class="typeNameLabel">Layer2Flow</span>
+extends java.lang.Object</pre>
+<div class="block">Models a layer 2 flow: groups packets exchanged between two specific endpoints (MAC addresses).</div>
+</li>
+</ul>
+</div>
+<div class="summary">
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+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#Layer2Flow-org.pcap4j.util.MacAddress-org.pcap4j.util.MacAddress-">Layer2Flow</a></span>(org.pcap4j.util.MacAddress endpoint1,
+ org.pcap4j.util.MacAddress endpoint2)</code> </td>
+</tr>
+</table>
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+<th class="colFirst" scope="col">Modifier and Type</th>
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+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#addFlowObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowObserver-">addFlowObserver</a></span>(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowObserver</a> observer)</code>
+<div class="block">Register as an observer of this flow.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#addPacket-org.pcap4j.core.PcapPacket-">addPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Add a packet to this flow.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>org.pcap4j.util.MacAddress</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#getEndpoint1--">getEndpoint1</a></span>()</code>
+<div class="block">Get the first endpoint of this flow.</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>org.pcap4j.util.MacAddress</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#getEndpoint2--">getEndpoint2</a></span>()</code>
+<div class="block">Get the second endpoint of this flow.</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>java.util.List<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#getPackets--">getPackets</a></span>()</code>
+<div class="block">Get the packets pertaining to this flow.</div>
+</td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#removeFlowObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowObserver-">removeFlowObserver</a></span>(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowObserver</a> observer)</code>
+<div class="block">Deregister as an observer of this flow.</div>
+</td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#toString--">toString</a></span>()</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Layer2Flow-org.pcap4j.util.MacAddress-org.pcap4j.util.MacAddress-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>Layer2Flow</h4>
+<pre>public Layer2Flow(org.pcap4j.util.MacAddress endpoint1,
+ org.pcap4j.util.MacAddress endpoint2)</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
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+<a name="getEndpoint1--">
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+<li class="blockList">
+<h4>getEndpoint1</h4>
+<pre>public org.pcap4j.util.MacAddress getEndpoint1()</pre>
+<div class="block">Get the first endpoint of this flow.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the first endpoint of this flow.</dd>
+</dl>
+</li>
+</ul>
+<a name="getEndpoint2--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getEndpoint2</h4>
+<pre>public org.pcap4j.util.MacAddress getEndpoint2()</pre>
+<div class="block">Get the second endpoint of this flow.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the second endpoint of this flow.</dd>
+</dl>
+</li>
+</ul>
+<a name="addFlowObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowObserver-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>addFlowObserver</h4>
+<pre>public void addFlowObserver(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowObserver</a> observer)</pre>
+<div class="block">Register as an observer of this flow.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>observer</code> - The client that is to be notified whenever this flow changes (has new packets added).</dd>
+</dl>
+</li>
+</ul>
+<a name="removeFlowObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowObserver-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>removeFlowObserver</h4>
+<pre>public void removeFlowObserver(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowObserver</a> observer)</pre>
+<div class="block">Deregister as an observer of this flow.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>observer</code> - The client that no longer wishes to be notified whenever this flow changes.</dd>
+</dl>
+</li>
+</ul>
+<a name="addPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>addPacket</h4>
+<pre>public void addPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Add a packet to this flow.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet that is to be added to the flow.</dd>
+</dl>
+</li>
+</ul>
+<a name="getPackets--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getPackets</h4>
+<pre>public java.util.List<org.pcap4j.core.PcapPacket> getPackets()</pre>
+<div class="block">Get the packets pertaining to this flow.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The packets pertaining to this flow.</dd>
+</dl>
+</li>
+</ul>
+<a name="toString--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>toString</h4>
+<pre>public java.lang.String toString()</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
+<dd><code>toString</code> in class <code>java.lang.Object</code></dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>Layer2FlowObserver</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Layer2FlowObserver";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":6};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
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+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Prev Class</span></a></li>
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Next Class</span></a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../../index.html?edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" target="_top">Frames</a></li>
+<li><a href="Layer2FlowObserver.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../../../allclasses-noframe.html">All Classes</a></li>
+</ul>
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+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.trafficreassembly.layer2</div>
+<h2 title="Interface Layer2FlowObserver" class="title">Interface Layer2FlowObserver</h2>
+</div>
+<div class="contentContainer">
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Known Implementing Classes:</dt>
+<dd><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2ClusterMatcher</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public interface <span class="typeNameLabel">Layer2FlowObserver</span></pre>
+<div class="block">Interface for observing a <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2Flow</code></a>.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html#onNewPacket-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-org.pcap4j.core.PcapPacket-">onNewPacket</a></span>(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a> flow,
+ org.pcap4j.core.PcapPacket newPacket)</code>
+<div class="block">Invoked when a new packet is added to the observed flow.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="onNewPacket-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>onNewPacket</h4>
+<pre>void onNewPacket(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a> flow,
+ org.pcap4j.core.PcapPacket newPacket)</pre>
+<div class="block">Invoked when a new packet is added to the observed flow.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>flow</code> - The observed flow.</dd>
+<dd><code>newPacket</code> - The packet that was added to the flow.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Prev Class</span></a></li>
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Next Class</span></a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../../index.html?edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" target="_top">Frames</a></li>
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+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
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+<!-- ======== END OF BOTTOM NAVBAR ======= -->
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+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>Layer2FlowReassembler</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Layer2FlowReassembler";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Prev Class</span></a></li>
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Next Class</span></a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../../index.html?edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" target="_top">Frames</a></li>
+<li><a href="Layer2FlowReassembler.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../../../allclasses-noframe.html">All Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
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+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.trafficreassembly.layer2</div>
+<h2 title="Class Layer2FlowReassembler" class="title">Class Layer2FlowReassembler</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassembler</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd>org.pcap4j.core.PacketListener</dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">Layer2FlowReassembler</span>
+extends java.lang.Object
+implements org.pcap4j.core.PacketListener</pre>
+<div class="block">Reassembles traffic flows at layer 2, i.e., for each combination of hosts, creates a list of packets exchanged
+ between said hosts.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
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+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#Layer2FlowReassembler--">Layer2FlowReassembler</a></span>()</code> </td>
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+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#addObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassemblerObserver-">addObserver</a></span>(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassemblerObserver</a> observer)</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#getFlowForAddresses-org.pcap4j.util.MacAddress-org.pcap4j.util.MacAddress-">getFlowForAddresses</a></span>(org.pcap4j.util.MacAddress addr1,
+ org.pcap4j.util.MacAddress addr2)</code>
+<div class="block">Get the traffic flow between two local endpoints (<code>MacAddress</code>es).</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>java.util.Collection<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#getFlows--">getFlows</a></span>()</code>
+<div class="block">Get all traffic flows, i.e., a traffic flow for each unique pair of endpoints (MAC addresses).</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code> </td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#removeObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassemblerObserver-">removeObserver</a></span>(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassemblerObserver</a> observer)</code> </td>
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+</table>
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+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Layer2FlowReassembler--">
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+</a>
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+<li class="blockList">
+<h4>Layer2FlowReassembler</h4>
+<pre>public Layer2FlowReassembler()</pre>
+</li>
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+</ul>
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+<li class="blockList">
+<h4>gotPacket</h4>
+<pre>public void gotPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code>gotPacket</code> in interface <code>org.pcap4j.core.PacketListener</code></dd>
+</dl>
+</li>
+</ul>
+<a name="addObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassemblerObserver-">
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+<h4>addObserver</h4>
+<pre>public void addObserver(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassemblerObserver</a> observer)</pre>
+</li>
+</ul>
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+<h4>removeObserver</h4>
+<pre>public void removeObserver(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassemblerObserver</a> observer)</pre>
+</li>
+</ul>
+<a name="getFlowForAddresses-org.pcap4j.util.MacAddress-org.pcap4j.util.MacAddress-">
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+</a>
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+<h4>getFlowForAddresses</h4>
+<pre>public <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a> getFlowForAddresses(org.pcap4j.util.MacAddress addr1,
+ org.pcap4j.util.MacAddress addr2)</pre>
+<div class="block">Get the traffic flow between two local endpoints (<code>MacAddress</code>es).</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>addr1</code> - The first endpoint.</dd>
+<dd><code>addr2</code> - The second endpoint</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The traffic exchanged between the two endpoints.</dd>
+</dl>
+</li>
+</ul>
+<a name="getFlows--">
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+</a>
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+<h4>getFlows</h4>
+<pre>public java.util.Collection<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a>> getFlows()</pre>
+<div class="block">Get all traffic flows, i.e., a traffic flow for each unique pair of endpoints (MAC addresses).</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>All traffic flows.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Next Class</span></a></li>
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+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
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+<a name="skip.navbar.bottom">
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+<!-- ======== END OF BOTTOM NAVBAR ======= -->
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--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>Layer2FlowReassemblerObserver</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Layer2FlowReassemblerObserver";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":6};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"]};
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+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Prev Class</span></a></li>
+<li>Next Class</li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../../index.html?edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" target="_top">Frames</a></li>
+<li><a href="Layer2FlowReassemblerObserver.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../../../allclasses-noframe.html">All Classes</a></li>
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+ if(window==top) {
+ allClassesLink.style.display = "block";
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+ else {
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+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.trafficreassembly.layer2</div>
+<h2 title="Interface Layer2FlowReassemblerObserver" class="title">Interface Layer2FlowReassemblerObserver</h2>
+</div>
+<div class="contentContainer">
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Known Implementing Classes:</dt>
+<dd><a href="../../../../../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2ClusterMatcher</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public interface <span class="typeNameLabel">Layer2FlowReassemblerObserver</span></pre>
+<div class="block">For observing a <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a>.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html#onNewFlow-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassembler-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-">onNewFlow</a></span>(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a> reassembler,
+ <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a> newFlow)</code>
+<div class="block">Invoked when when a <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a> detects a new flow (i.e., when it encounters traffic between two
+ MAC addresses that has not previously communicated in the traffic trace).</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="onNewFlow-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassembler-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>onNewFlow</h4>
+<pre>void onNewFlow(<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a> reassembler,
+ <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a> newFlow)</pre>
+<div class="block">Invoked when when a <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a> detects a new flow (i.e., when it encounters traffic between two
+ MAC addresses that has not previously communicated in the traffic trace).</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>reassembler</code> - The <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a> that detected the new flow.</dd>
+<dd><code>newFlow</code> - The new flow.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Prev Class</span></a></li>
+<li>Next Class</li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../../index.html?edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" target="_top">Frames</a></li>
+<li><a href="Layer2FlowReassemblerObserver.html" target="_top">No Frames</a></li>
+</ul>
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+<li><a href="../../../../../allclasses-noframe.html">All Classes</a></li>
+</ul>
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+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_bottom");
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+ allClassesLink.style.display = "block";
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+ else {
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+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li>Constr | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
+</body>
+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>edu.uci.iotproject.trafficreassembly.layer2</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<h1 class="bar"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/package-summary.html" target="classFrame">edu.uci.iotproject.trafficreassembly.layer2</a></h1>
+<div class="indexContainer">
+<h2 title="Interfaces">Interfaces</h2>
+<ul title="Interfaces">
+<li><a href="Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2" target="classFrame"><span class="interfaceName">Layer2FlowObserver</span></a></li>
+<li><a href="Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2" target="classFrame"><span class="interfaceName">Layer2FlowReassemblerObserver</span></a></li>
+</ul>
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+<td class="colLast">
+<div class="block">Models a layer 2 flow: groups packets exchanged between two specific endpoints (MAC addresses).</div>
+</td>
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+<td class="colFirst"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a></td>
+<td class="colLast">
+<div class="block">Reassembles traffic flows at layer 2, i.e., for each combination of hosts, creates a list of packets exchanged
+ between said hosts.</div>
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+<li type="circle">edu.uci.iotproject.trafficreassembly.layer2.<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2Flow</span></a></li>
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+</ul>
+</li>
+</ul>
+<h2 title="Interface Hierarchy">Interface Hierarchy</h2>
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+<li type="circle">edu.uci.iotproject.trafficreassembly.layer2.<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2FlowObserver</span></a></li>
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+<!-- NewPage -->
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+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>Conversation.Direction</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
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+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Conversation.Direction";
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+var methods = {"i0":6,"i1":9,"i2":9};
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+var tableTab = "tableTab";
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+<div>JavaScript is disabled on your browser.</div>
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+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">Next Class</span></a></li>
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+<div>
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+<li>Summary: </li>
+<li>Nested | </li>
+<li><a href="#enum.constant.summary">Enum Constants</a> | </li>
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+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
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+<div class="subTitle">edu.uci.iotproject.trafficreassembly.layer3</div>
+<h2 title="Enum Conversation.Direction" class="title">Enum Conversation.Direction</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>java.lang.Enum<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a>></li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.trafficreassembly.layer3.Conversation.Direction</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd>java.io.Serializable, java.lang.Comparable<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a>></dd>
+</dl>
+<dl>
+<dt>Enclosing class:</dt>
+<dd><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public static enum <span class="typeNameLabel">Conversation.Direction</span>
+extends java.lang.Enum<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a>></pre>
+<div class="block">Utility enum for expressing the direction of a packet pertaining to this <code>Conversation</code>.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
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+<ul class="blockList">
+<li class="blockList"><a name="enum.constant.summary">
+<!-- -->
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+<h3>Enum Constant Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Enum Constant Summary table, listing enum constants, and an explanation">
+<caption><span>Enum Constants</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Enum Constant and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html#CLIENT_TO_SERVER">CLIENT_TO_SERVER</a></span></code> </td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html#SERVER_TO_CLIENT">SERVER_TO_CLIENT</a></span></code> </td>
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+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>abstract java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html#toCompactString--">toCompactString</a></span>()</code>
+<div class="block">Get a compact string representation of this <code>Direction</code>.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>static <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html#valueOf-java.lang.String-">valueOf</a></span>(java.lang.String name)</code>
+<div class="block">Returns the enum constant of this type with the specified name.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>static <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a>[]</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html#values--">values</a></span>()</code>
+<div class="block">Returns an array containing the constants of this enum type, in
+the order they are declared.</div>
+</td>
+</tr>
+</table>
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+</a>
+<h3>Methods inherited from class java.lang.Enum</h3>
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+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
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+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+<div class="details">
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+<li class="blockList">
+<!-- ============ ENUM CONSTANT DETAIL =========== -->
+<ul class="blockList">
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+<h3>Enum Constant Detail</h3>
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+</a>
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+<h4>CLIENT_TO_SERVER</h4>
+<pre>public static final <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a> CLIENT_TO_SERVER</pre>
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+<h4>SERVER_TO_CLIENT</h4>
+<pre>public static final <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a> SERVER_TO_CLIENT</pre>
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+<pre>public static <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a>[] values()</pre>
+<div class="block">Returns an array containing the constants of this enum type, in
+the order they are declared. This method may be used to iterate
+over the constants as follows:
+<pre>
+for (Conversation.Direction c : Conversation.Direction.values())
+ System.out.println(c);
+</pre></div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>an array containing the constants of this enum type, in the order they are declared</dd>
+</dl>
+</li>
+</ul>
+<a name="valueOf-java.lang.String-">
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+</a>
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+<h4>valueOf</h4>
+<pre>public static <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a> valueOf(java.lang.String name)</pre>
+<div class="block">Returns the enum constant of this type with the specified name.
+The string must match <i>exactly</i> an identifier used to declare an
+enum constant in this type. (Extraneous whitespace characters are
+not permitted.)</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>name</code> - the name of the enum constant to be returned.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the enum constant with the specified name</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.lang.IllegalArgumentException</code> - if this enum type has no constant with the specified name</dd>
+<dd><code>java.lang.NullPointerException</code> - if the argument is null</dd>
+</dl>
+</li>
+</ul>
+<a name="toCompactString--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>toCompactString</h4>
+<pre>public abstract java.lang.String toCompactString()</pre>
+<div class="block">Get a compact string representation of this <code>Direction</code>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a compact string representation of this <code>Direction</code>.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
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+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">Prev Class</span></a></li>
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">Next Class</span></a></li>
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+<ul class="subNavList">
+<li>Summary: </li>
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+<li><a href="#enum.constant.summary">Enum Constants</a> | </li>
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+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li><a href="#enum.constant.detail">Enum Constants</a> | </li>
+<li>Field | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
+</body>
+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>Conversation</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Conversation";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":9,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10,"i16":10,"i17":10};
+var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li>Prev Class</li>
+<li><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">Next Class</span></a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../../index.html?edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" target="_top">Frames</a></li>
+<li><a href="Conversation.html" target="_top">No Frames</a></li>
+</ul>
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+<li><a href="../../../../../allclasses-noframe.html">All Classes</a></li>
+</ul>
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+ else {
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+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li><a href="#nested.class.summary">Nested</a> | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.trafficreassembly.layer3</div>
+<h2 title="Class Conversation" class="title">Class Conversation</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.trafficreassembly.layer3.Conversation</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">Conversation</span>
+extends java.lang.Object</pre>
+<div class="block">Models a (TCP) conversation/connection/session/flow (packet's belonging to the same session between a client and a
+ server).
+ Holds a list of <code>PcapPacket</code>s identified as pertaining to the flow. Note that this list is <em>not</em>
+ considered when determining equality of two <code>Conversation</code> instances in order to allow for a
+ <code>Conversation</code> to function as a key in data structures such as <code>Map</code> and <code>Set</code>.
+ See <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#equals-java.lang.Object-"><code>equals(Object)</code></a> for the definition of equality.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== NESTED CLASS SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="nested.class.summary">
+<!-- -->
+</a>
+<h3>Nested Class Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Nested Class Summary table, listing nested classes, and an explanation">
+<caption><span>Nested Classes</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Class and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><code>static class </code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a></span></code>
+<div class="block">Utility enum for expressing the direction of a packet pertaining to this <code>Conversation</code>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#Conversation-java.lang.String-int-java.lang.String-int-">Conversation</a></span>(java.lang.String clientIp,
+ int clientPort,
+ java.lang.String serverIp,
+ int serverPort)</code>
+<div class="block">Constructs a new <code>Conversation</code>.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addFinPacket-org.pcap4j.core.PcapPacket-">addFinPacket</a></span>(org.pcap4j.core.PcapPacket finPacket)</code>
+<div class="block">Adds a TCP FIN packet to the list of TCP FIN packets associated with this conversation.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addPacket-org.pcap4j.core.PcapPacket-boolean-">addPacket</a></span>(org.pcap4j.core.PcapPacket packet,
+ boolean ignoreRetransmissions)</code>
+<div class="block">Add a packet to the list of packets associated with this conversation.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addRstPacket-org.pcap4j.core.PcapPacket-">addRstPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Add a TCP segment for which the RST flag is set to this <code>Conversation</code>.</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addSynPacket-org.pcap4j.core.PcapPacket-">addSynPacket</a></span>(org.pcap4j.core.PcapPacket synPacket)</code>
+<div class="block">Records a TCP SYN packet as pertaining to this conversation (adds it to the the internal list).</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#attemptAcknowledgementOfFin-org.pcap4j.core.PcapPacket-">attemptAcknowledgementOfFin</a></span>(org.pcap4j.core.PcapPacket ackPacket)</code>
+<div class="block">Attempt to ACK any FIN packets held by this conversation.</div>
+</td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#equals-java.lang.Object-">equals</a></span>(java.lang.Object obj)</code>
+<div class="block"><em>Note:</em> currently, equality is determined based on pairwise equality of the elements of the four tuple
+ (<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mClientIp"><code>mClientIp</code></a>, <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mClientPort"><code>mClientPort</code></a>, <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mServerIp"><code>mServerIp</code></a>, <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mServerPort"><code>mServerPort</code></a>) for <code>this</code> and
+ <code>obj</code>.</div>
+</td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>static <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#fromPcapPacket-org.pcap4j.core.PcapPacket-boolean-">fromPcapPacket</a></span>(org.pcap4j.core.PcapPacket pcapPacket,
+ boolean clientIsSrc)</code>
+<div class="block">Factory method for creating a <code>Conversation</code> from a <code>PcapPacket</code>.</div>
+</td>
+</tr>
+<tr id="i7" class="rowColor">
+<td class="colFirst"><code><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getDirection-org.pcap4j.core.PcapPacket-">getDirection</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Determine the direction of <code>packet</code>.</div>
+</td>
+</tr>
+<tr id="i8" class="altColor">
+<td class="colFirst"><code>java.util.List<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">FinAckPair</a>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getFinAckPairs--">getFinAckPairs</a></span>()</code>
+<div class="block">Retrieves an unmodifiable view of the list of <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>FinAckPair</code></a>s associated with this <code>Conversation</code>.</div>
+</td>
+</tr>
+<tr id="i9" class="rowColor">
+<td class="colFirst"><code>java.util.List<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getPackets--">getPackets</a></span>()</code>
+<div class="block">Get a list of packets pertaining to this <code>Conversation</code>.</div>
+</td>
+</tr>
+<tr id="i10" class="altColor">
+<td class="colFirst"><code>java.util.List<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getRstPackets--">getRstPackets</a></span>()</code>
+<div class="block">Get the TCP segments pertaining to this <code>Conversation</code> for which it was detected that the RST flag is set.</div>
+</td>
+</tr>
+<tr id="i11" class="rowColor">
+<td class="colFirst"><code>java.util.List<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getSynPackets--">getSynPackets</a></span>()</code>
+<div class="block">Get a list of SYN packets pertaining to this <code>Conversation</code>.</div>
+</td>
+</tr>
+<tr id="i12" class="altColor">
+<td class="colFirst"><code>java.util.List<org.pcap4j.core.PcapPacket></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getTlsApplicationDataPackets--">getTlsApplicationDataPackets</a></span>()</code>
+<div class="block">If this <code>Conversation</code> is backing a TLS session (i.e., if the value of <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isTls--"><code>isTls()</code></a> is <code>true</code>),
+ get the packets labeled as TLS Application Data packets.</div>
+</td>
+</tr>
+<tr id="i13" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#hashCode--">hashCode</a></span>()</code> </td>
+</tr>
+<tr id="i14" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isGracefullyShutdown--">isGracefullyShutdown</a></span>()</code>
+<div class="block">Get if this <code>Conversation</code> is considered to have been gracefully shut down.</div>
+</td>
+</tr>
+<tr id="i15" class="rowColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isRetransmission-org.pcap4j.core.PcapPacket-">isRetransmission</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">
+ Determines if the TCP packet contained in <code>packet</code> is a retransmission of a previously seen (logged)
+ packet.</div>
+</td>
+</tr>
+<tr id="i16" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isTls--">isTls</a></span>()</code>
+<div class="block">
+ Is this <code>Conversation</code> a TLS session?</div>
+</td>
+</tr>
+<tr id="i17" class="rowColor">
+<td class="colFirst"><code>java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#toString--">toString</a></span>()</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>getClass, notify, notifyAll, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Conversation-java.lang.String-int-java.lang.String-int-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>Conversation</h4>
+<pre>public Conversation(java.lang.String clientIp,
+ int clientPort,
+ java.lang.String serverIp,
+ int serverPort)</pre>
+<div class="block">Constructs a new <code>Conversation</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>clientIp</code> - The IP of the host that is considered the client (i.e. the host that initiates the conversation)
+ in the conversation.</dd>
+<dd><code>clientPort</code> - The port number used by the client for the conversation.</dd>
+<dd><code>serverIp</code> - The IP of the host that is considered the server (i.e. is the responder) in the conversation.</dd>
+<dd><code>serverPort</code> - The port number used by the server for the conversation.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="fromPcapPacket-org.pcap4j.core.PcapPacket-boolean-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>fromPcapPacket</h4>
+<pre>public static <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a> fromPcapPacket(org.pcap4j.core.PcapPacket pcapPacket,
+ boolean clientIsSrc)</pre>
+<div class="block">Factory method for creating a <code>Conversation</code> from a <code>PcapPacket</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>pcapPacket</code> - The <code>PcapPacket</code> that wraps a TCP segment for which a <code>Conversation</code> is to be initiated.</dd>
+<dd><code>clientIsSrc</code> - If <code>true</code>, the source address and source port found in the IP datagram and TCP segment
+ wrapped in the <code>PcapPacket</code> are regarded as pertaining to the client, and the destination
+ address and destination port are regarded as pertaining to the server---and vice versa if set
+ to <code>false</code>.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>Conversation</code> initiated with ip:port for client and server according to the direction of the packet.</dd>
+</dl>
+</li>
+</ul>
+<a name="addPacket-org.pcap4j.core.PcapPacket-boolean-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>addPacket</h4>
+<pre>public void addPacket(org.pcap4j.core.PcapPacket packet,
+ boolean ignoreRetransmissions)</pre>
+<div class="block">Add a packet to the list of packets associated with this conversation.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet that is to be added to (associated with) this conversation.</dd>
+<dd><code>ignoreRetransmissions</code> - Boolean value indicating if retransmissions should be ignored.
+ If set to <code>true</code>, <code>packet</code> will <em>not</em> be added to the
+ internal list of packets pertaining to this <code>Conversation</code>
+ <em>iff</em> the sequence number of <code>packet</code> was already
+ seen in a previous packet.</dd>
+</dl>
+</li>
+</ul>
+<a name="getPackets--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getPackets</h4>
+<pre>public java.util.List<org.pcap4j.core.PcapPacket> getPackets()</pre>
+<div class="block">Get a list of packets pertaining to this <code>Conversation</code>.
+ The returned list is a read-only list.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the list of packets pertaining to this <code>Conversation</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="addSynPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>addSynPacket</h4>
+<pre>public boolean addSynPacket(org.pcap4j.core.PcapPacket synPacket)</pre>
+<div class="block">Records a TCP SYN packet as pertaining to this conversation (adds it to the the internal list).
+ Attempts to add duplicate SYN packets will be ignored, and the caller is made aware of the attempt to add a
+ duplicate by the return value being <code>false</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>synPacket</code> - A <code>PcapPacket</code> wrapping a TCP SYN packet.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if the packet was successfully added to this <code>Conversation</code>, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="getSynPackets--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getSynPackets</h4>
+<pre>public java.util.List<org.pcap4j.core.PcapPacket> getSynPackets()</pre>
+<div class="block">Get a list of SYN packets pertaining to this <code>Conversation</code>.
+ The returned list is a read-only list.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the list of SYN packets pertaining to this <code>Conversation</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="addFinPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>addFinPacket</h4>
+<pre>public void addFinPacket(org.pcap4j.core.PcapPacket finPacket)</pre>
+<div class="block">Adds a TCP FIN packet to the list of TCP FIN packets associated with this conversation.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>finPacket</code> - The TCP FIN packet that is to be added to (associated with) this conversation.</dd>
+</dl>
+</li>
+</ul>
+<a name="attemptAcknowledgementOfFin-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>attemptAcknowledgementOfFin</h4>
+<pre>public void attemptAcknowledgementOfFin(org.pcap4j.core.PcapPacket ackPacket)</pre>
+<div class="block">Attempt to ACK any FIN packets held by this conversation.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>ackPacket</code> - The ACK for a FIN previously added to this conversation.</dd>
+</dl>
+</li>
+</ul>
+<a name="getFinAckPairs--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getFinAckPairs</h4>
+<pre>public java.util.List<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">FinAckPair</a>> getFinAckPairs()</pre>
+<div class="block">Retrieves an unmodifiable view of the list of <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>FinAckPair</code></a>s associated with this <code>Conversation</code>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>an unmodifiable view of the list of <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>FinAckPair</code></a>s associated with this <code>Conversation</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="isGracefullyShutdown--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isGracefullyShutdown</h4>
+<pre>public boolean isGracefullyShutdown()</pre>
+<div class="block">Get if this <code>Conversation</code> is considered to have been gracefully shut down.
+ A <code>Conversation</code> has been gracefully shut down if it contains a FIN+ACK pair for both directions
+ (client to server, and server to client).</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if the connection has been gracefully shut down, false otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="addRstPacket-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>addRstPacket</h4>
+<pre>public void addRstPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Add a TCP segment for which the RST flag is set to this <code>Conversation</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - A <code>PcapPacket</code> wrapping a TCP segment pertaining to this <code>Conversation</code> for which the
+ RST flag is set.</dd>
+</dl>
+</li>
+</ul>
+<a name="getRstPackets--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getRstPackets</h4>
+<pre>public java.util.List<org.pcap4j.core.PcapPacket> getRstPackets()</pre>
+<div class="block">Get the TCP segments pertaining to this <code>Conversation</code> for which it was detected that the RST flag is set.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the TCP segments pertaining to this <code>Conversation</code> for which it was detected that the RST flag is
+ set.</dd>
+</dl>
+</li>
+</ul>
+<a name="equals-java.lang.Object-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>equals</h4>
+<pre>public boolean equals(java.lang.Object obj)</pre>
+<div class="block"><em>Note:</em> currently, equality is determined based on pairwise equality of the elements of the four tuple
+ (<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mClientIp"><code>mClientIp</code></a>, <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mClientPort"><code>mClientPort</code></a>, <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mServerIp"><code>mServerIp</code></a>, <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mServerPort"><code>mServerPort</code></a>) for <code>this</code> and
+ <code>obj</code>.</div>
+<dl>
+<dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
+<dd><code>equals</code> in class <code>java.lang.Object</code></dd>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>obj</code> - The object to test for equality with <code>this</code>.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if <code>obj</code> is considered equal to <code>this</code> based on the definition of equality given above.</dd>
+</dl>
+</li>
+</ul>
+<a name="hashCode--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>hashCode</h4>
+<pre>public int hashCode()</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
+<dd><code>hashCode</code> in class <code>java.lang.Object</code></dd>
+</dl>
+</li>
+</ul>
+<a name="toString--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>toString</h4>
+<pre>public java.lang.String toString()</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
+<dd><code>toString</code> in class <code>java.lang.Object</code></dd>
+</dl>
+</li>
+</ul>
+<a name="isRetransmission-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isRetransmission</h4>
+<pre>public boolean isRetransmission(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block"><p>
+ Determines if the TCP packet contained in <code>packet</code> is a retransmission of a previously seen (logged)
+ packet.
+ </p>
+
+ <b>
+ TODO:
+ the current implementation, which uses a set of previously seen sequence numbers, will consider a segment
+ with a reused sequence number---occurring as a result of sequence number wrap around for a very long-lived
+ connection---as a retransmission (and may therefore end up discarding it even though it is in fact NOT a
+ retransmission). Ideas?
+ </b></div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if <code>packet</code> was determined to be a retransmission, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="isTls--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isTls</h4>
+<pre>public boolean isTls()</pre>
+<div class="block"><p>
+ Is this <code>Conversation</code> a TLS session?
+ </p>
+
+ <em>Note: the current implementation simply examines the port number(s) for 443; it does <b>not</b> verify if the
+ application data is indeed encrypted.</em></div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if this <code>Conversation</code> is interpreted as a TLS session, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="getTlsApplicationDataPackets--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getTlsApplicationDataPackets</h4>
+<pre>public java.util.List<org.pcap4j.core.PcapPacket> getTlsApplicationDataPackets()</pre>
+<div class="block">If this <code>Conversation</code> is backing a TLS session (i.e., if the value of <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isTls--"><code>isTls()</code></a> is <code>true</code>),
+ get the packets labeled as TLS Application Data packets. This is a subset of the full set of payload-carrying
+ packets (as returned by <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getPackets--"><code>getPackets()</code></a>). An exception is thrown if this method is invoked on a
+ <code>Conversation</code> for which <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isTls--"><code>isTls()</code></a> returns <code>false</code>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A list containing exactly those packets that could be identified as TLS Application Data packets (through
+ inspecting of the SSL record header). The list may be empty, if no TLS application data packets have been
+ recorded for this <code>Conversation</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getDirection-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>getDirection</h4>
+<pre>public <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a> getDirection(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Determine the direction of <code>packet</code>. An <code>IllegalArgumentException</code> is thrown if <code>packet</code> does
+ not pertain to this conversation.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet whose direction is to be determined.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation.Direction</code></a> indicating the direction of the packet.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
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+<title>FinAckPair</title>
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+<li>Field | </li>
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+<li><a href="#method.summary">Method</a></li>
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+<div class="header">
+<div class="subTitle">edu.uci.iotproject.trafficreassembly.layer3</div>
+<h2 title="Class FinAckPair" class="title">Class FinAckPair</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.trafficreassembly.layer3.FinAckPair</li>
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+<pre>public class <span class="typeNameLabel">FinAckPair</span>
+extends java.lang.Object</pre>
+<div class="block">Groups a FIN packet and its corresponding ACK packet. <b>Immutable and thread safe</b>.</div>
+</li>
+</ul>
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+</a>
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+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#FinAckPair-org.pcap4j.core.PcapPacket-">FinAckPair</a></span>(org.pcap4j.core.PcapPacket finPacket)</code>
+<div class="block">Constructs a <code>FinAckPair</code> given a FIN packet.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#FinAckPair-org.pcap4j.core.PcapPacket-org.pcap4j.core.PcapPacket-">FinAckPair</a></span>(org.pcap4j.core.PcapPacket finPacket,
+ org.pcap4j.core.PcapPacket correspondingAckPacket)</code>
+<div class="block">Constructs a <code>FinAckPair</code> given a FIN and an ACK packet.</div>
+</td>
+</tr>
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+</li>
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+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>org.pcap4j.core.PcapPacket</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#getCorrespondingAckPacket--">getCorrespondingAckPacket</a></span>()</code>
+<div class="block">Get the corresponding ACK packet of this pair, if any.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>org.pcap4j.core.PcapPacket</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#getFinPacket--">getFinPacket</a></span>()</code>
+<div class="block">Get the FIN packet of this pair.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#isAcknowledged--">isAcknowledged</a></span>()</code>
+<div class="block">Was the FIN in this <code>FinAckPair</code> acknowledged?</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#isCorrespondingAckPacket-org.pcap4j.core.PcapPacket-">isCorrespondingAckPacket</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Checks if a given packet is an ACK corresponding to the FIN packet in this <code>FinAckPair</code>.</div>
+</td>
+</tr>
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+</ul>
+</li>
+</ul>
+</li>
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+<li class="blockList">
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+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
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+</a>
+<h3>Constructor Detail</h3>
+<a name="FinAckPair-org.pcap4j.core.PcapPacket-">
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+</a>
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+<h4>FinAckPair</h4>
+<pre>public FinAckPair(org.pcap4j.core.PcapPacket finPacket)</pre>
+<div class="block">Constructs a <code>FinAckPair</code> given a FIN packet.
+ The corresponding ACK packet field is set to <code>null</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>finPacket</code> - A FIN packet.</dd>
+</dl>
+</li>
+</ul>
+<a name="FinAckPair-org.pcap4j.core.PcapPacket-org.pcap4j.core.PcapPacket-">
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+<h4>FinAckPair</h4>
+<pre>public FinAckPair(org.pcap4j.core.PcapPacket finPacket,
+ org.pcap4j.core.PcapPacket correspondingAckPacket)</pre>
+<div class="block">Constructs a <code>FinAckPair</code> given a FIN and an ACK packet.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>finPacket</code> - A FIN packet.</dd>
+<dd><code>correspondingAckPacket</code> - The ACK packet corresponding to <code>finPacket</code>.</dd>
+</dl>
+</li>
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+<h4>getFinPacket</h4>
+<pre>public org.pcap4j.core.PcapPacket getFinPacket()</pre>
+<div class="block">Get the FIN packet of this pair.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the FIN packet of this pair.</dd>
+</dl>
+</li>
+</ul>
+<a name="getCorrespondingAckPacket--">
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+</a>
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+<h4>getCorrespondingAckPacket</h4>
+<pre>public org.pcap4j.core.PcapPacket getCorrespondingAckPacket()</pre>
+<div class="block">Get the corresponding ACK packet of this pair, if any.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the corresponding ACK packet of this pair, if any.</dd>
+</dl>
+</li>
+</ul>
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+<h4>isAcknowledged</h4>
+<pre>public boolean isAcknowledged()</pre>
+<div class="block">Was the FIN in this <code>FinAckPair</code> acknowledged?</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if the corresponding ACK has been set in this <code>FinAckPair</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="isCorrespondingAckPacket-org.pcap4j.core.PcapPacket-">
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+<h4>isCorrespondingAckPacket</h4>
+<pre>public boolean isCorrespondingAckPacket(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Checks if a given packet is an ACK corresponding to the FIN packet in this <code>FinAckPair</code>.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if <code>packet</code> is an ACK that corresponds to the FIN in this pair, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.trafficreassembly.layer3</div>
+<h2 title="Class TcpReassembler" class="title">Class TcpReassembler</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.trafficreassembly.layer3.TcpReassembler</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Implemented Interfaces:</dt>
+<dd>org.pcap4j.core.PacketListener</dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">TcpReassembler</span>
+extends java.lang.Object
+implements org.pcap4j.core.PacketListener</pre>
+<div class="block">Reassembles TCP conversations (streams).
+ <b>Note: current version only supports TCP over IPv4.</b></div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
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+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html#TcpReassembler--">TcpReassembler</a></span>()</code> </td>
+</tr>
+</table>
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+</ul>
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+<!-- -->
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+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>java.util.List<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html#getTcpConversations--">getTcpConversations</a></span>()</code>
+<div class="block">Get the reassembled TCP connections.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket</a></span>(org.pcap4j.core.PcapPacket pcapPacket)</code> </td>
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+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
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+<a name="TcpReassembler--">
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+<h4>TcpReassembler</h4>
+<pre>public TcpReassembler()</pre>
+</li>
+</ul>
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+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="gotPacket-org.pcap4j.core.PcapPacket-">
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+<ul class="blockList">
+<li class="blockList">
+<h4>gotPacket</h4>
+<pre>public void gotPacket(org.pcap4j.core.PcapPacket pcapPacket)</pre>
+<dl>
+<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
+<dd><code>gotPacket</code> in interface <code>org.pcap4j.core.PacketListener</code></dd>
+</dl>
+</li>
+</ul>
+<a name="getTcpConversations--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>getTcpConversations</h4>
+<pre>public java.util.List<<a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> getTcpConversations()</pre>
+<div class="block">Get the reassembled TCP connections. Note that if this is called while packets are still being processed (by
+ calls to <a href="../../../../../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html#gotPacket-org.pcap4j.core.PcapPacket-"><code>gotPacket(PcapPacket)</code></a>), the behavior is undefined and the returned list may be inconsistent.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The reassembled TCP connections.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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+<h2 title="Class PcapPacketUtils" class="title">Class PcapPacketUtils</h2>
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+<pre>public final class <span class="typeNameLabel">PcapPacketUtils</span>
+extends java.lang.Object</pre>
+<div class="block">Utility methods for inspecting <code>PcapPacket</code> properties.</div>
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+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
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+<tr id="i0" class="altColor">
+<td class="colFirst"><code>static java.util.List<java.util.List<org.pcap4j.core.PcapPacket>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#clusterToListOfPcapPackets-org.apache.commons.math3.stat.clustering.Cluster-">clusterToListOfPcapPackets</a></span>(org.apache.commons.math3.stat.clustering.Cluster<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> cluster)</code>
+<div class="block">Transform a <code>Cluster</code> of <code>PcapPacketPair</code> objects into a <code>List</code> of <code>List</code> of
+ <code>PcapPacket</code> objects.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>static java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#concatSequences-java.util.List-java.util.List-">concatSequences</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signatures,
+ java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</code>
+<div class="block">Concatenate sequences in <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>static java.util.List<java.util.List<org.pcap4j.core.PcapPacket>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#extractRangeCorePoints-java.util.List-double-int-">extractRangeCorePoints</a></span>(java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> pairs,
+ double eps,
+ int minPts)</code>
+<div class="block">Extract core point range in the form of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>static java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#getDestinationIp-org.pcap4j.core.PcapPacket-">getDestinationIp</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Gets the destination IP (in decimal format) of an IPv4 packet.</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>static int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#getDestinationPort-org.pcap4j.core.PcapPacket-">getDestinationPort</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Gets the destination port of a TCP packet.</div>
+</td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>static org.pcap4j.util.MacAddress</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#getEthDstAddr-org.pcap4j.core.PcapPacket-">getEthDstAddr</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Gets the destination address of the Ethernet part of <code>packet</code>.</div>
+</td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>static org.pcap4j.util.MacAddress</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#getEthSrcAddr-org.pcap4j.core.PcapPacket-">getEthSrcAddr</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Gets the source address of the Ethernet part of <code>packet</code>.</div>
+</td>
+</tr>
+<tr id="i7" class="rowColor">
+<td class="colFirst"><code>static java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#getSourceIp-org.pcap4j.core.PcapPacket-">getSourceIp</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Gets the source IP (in decimal format) of an IPv4 packet.</div>
+</td>
+</tr>
+<tr id="i8" class="altColor">
+<td class="colFirst"><code>static int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#getSourcePort-org.pcap4j.core.PcapPacket-">getSourcePort</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Gets the source port of a TCP packet.</div>
+</td>
+</tr>
+<tr id="i9" class="rowColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#isAck-org.pcap4j.core.PcapPacket-">isAck</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Checks if <code>packet</code> wraps a TCP packet th at has the ACK flag set.</div>
+</td>
+</tr>
+<tr id="i10" class="altColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#isConservativeChecking-java.util.List-java.util.List-double-">isConservativeChecking</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signature,
+ java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> otherSignature,
+ double eps)</code>
+<div class="block">Check if there is any overlap between the signature stored in this class and another signature.</div>
+</td>
+</tr>
+<tr id="i11" class="rowColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#isDestination-org.pcap4j.core.PcapPacket-java.lang.String-int-">isDestination</a></span>(org.pcap4j.core.PcapPacket packet,
+ java.lang.String ip,
+ int port)</code>
+<div class="block">Helper method to determine if the given combination of IP and port matches the destination of the given packet.</div>
+</td>
+</tr>
+<tr id="i12" class="altColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#isDstIpLocal-org.pcap4j.core.PcapPacket-">isDstIpLocal</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Checks if the destination IP address of the <code>IpV4Packet</code> contained in <code>packet</code> is a local address,
+ i.e., if it pertains to subnet 10.0.0.0/8, 172.16.0.0/16, or 192.168.0.0/16.</div>
+</td>
+</tr>
+<tr id="i13" class="rowColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#isRangeBasedMatching-java.util.List-double-java.util.List...-">isRangeBasedMatching</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signature,
+ double eps,
+ java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>>... otherSignatures)</code>
+<div class="block">Test the conservativeness of the signatures (basically whether we want strict or range-based matching).</div>
+</td>
+</tr>
+<tr id="i14" class="altColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#isSource-org.pcap4j.core.PcapPacket-java.lang.String-int-">isSource</a></span>(org.pcap4j.core.PcapPacket packet,
+ java.lang.String ip,
+ int port)</code>
+<div class="block">Helper method to determine if the given combination of IP and port matches the source of the given packet.</div>
+</td>
+</tr>
+<tr id="i15" class="rowColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#isSrcIpLocal-org.pcap4j.core.PcapPacket-">isSrcIpLocal</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Checks if the source IP address of the <code>IpV4Packet</code> contained in <code>packet</code> is a local address, i.e.,
+ if it pertains to subnet 10.0.0.0/8, 172.16.0.0/16, or 192.168.0.0/16.</div>
+</td>
+</tr>
+<tr id="i16" class="altColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#isSyn-org.pcap4j.core.PcapPacket-">isSyn</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Checks if <code>packet</code> wraps a TCP packet that has the SYN flag set.</div>
+</td>
+</tr>
+<tr id="i17" class="rowColor">
+<td class="colFirst"><code>static boolean</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#isTcp-org.pcap4j.core.PcapPacket-">isTcp</a></span>(org.pcap4j.core.PcapPacket packet)</code>
+<div class="block">Determines if a given <code>PcapPacket</code> wraps a <code>TcpPacket</code>.</div>
+</td>
+</tr>
+<tr id="i18" class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#printSignatures-java.util.List-java.io.PrintWriter-boolean-">printSignatures</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signatures,
+ java.io.PrintWriter resultsWriter,
+ boolean printToOutput)</code>
+<div class="block">Print signatures in <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+</td>
+</tr>
+<tr id="i19" class="rowColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#removeSequenceFromSignature-java.util.List-int-">removeSequenceFromSignature</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signatures,
+ int sequenceIndex)</code>
+<div class="block">Remove a sequence in a signature object.</div>
+</td>
+</tr>
+<tr id="i20" class="altColor">
+<td class="colFirst"><code>static java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#sortSequences-java.util.List-">sortSequences</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signatures)</code>
+<div class="block">Sort the sequences in the <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+</td>
+</tr>
+<tr id="i21" class="rowColor">
+<td class="colFirst"><code>static java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html#useRangeBasedMatching-java.util.List-java.util.List-">useRangeBasedMatching</a></span>(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signature,
+ java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> corePointRange)</code>
+<div class="block">Test the conservativeness of the signatures (basically whether we want strict or range-based matching).</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="PcapPacketUtils--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>PcapPacketUtils</h4>
+<pre>public PcapPacketUtils()</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="getEthSrcAddr-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getEthSrcAddr</h4>
+<pre>public static org.pcap4j.util.MacAddress getEthSrcAddr(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Gets the source address of the Ethernet part of <code>packet</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet for which the Ethernet source address is to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The source address of the Ethernet part of <code>packet</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getEthDstAddr-org.pcap4j.core.PcapPacket-">
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+<h4>getEthDstAddr</h4>
+<pre>public static org.pcap4j.util.MacAddress getEthDstAddr(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Gets the destination address of the Ethernet part of <code>packet</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet for which the Ethernet destination address is to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The destination address of the Ethernet part of <code>packet</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="isTcp-org.pcap4j.core.PcapPacket-">
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+<h4>isTcp</h4>
+<pre>public static boolean isTcp(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Determines if a given <code>PcapPacket</code> wraps a <code>TcpPacket</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The <code>PcapPacket</code> to inspect.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if <code>packet</code> wraps a <code>TcpPacket</code>, <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="getSourceIp-org.pcap4j.core.PcapPacket-">
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+<h4>getSourceIp</h4>
+<pre>public static java.lang.String getSourceIp(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Gets the source IP (in decimal format) of an IPv4 packet.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet for which the IPv4 source address is to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The decimal representation of the source IP of <code>packet</code> <em>iff</em> <code>packet</code> wraps an
+ <code>IpV4Packet</code>.</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.lang.NullPointerException</code> - if <code>packet</code> does not encapsulate an <code>IpV4Packet</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="getDestinationIp-org.pcap4j.core.PcapPacket-">
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+<h4>getDestinationIp</h4>
+<pre>public static java.lang.String getDestinationIp(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Gets the destination IP (in decimal format) of an IPv4 packet.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet for which the IPv4 source address is to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The decimal representation of the destination IP of <code>packet</code> <em>iff</em> <code>packet</code> wraps an
+ <code>IpV4Packet</code>.</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.lang.NullPointerException</code> - if <code>packet</code> does not encapsulate an <code>IpV4Packet</code>.</dd>
+</dl>
+</li>
+</ul>
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+<h4>getSourcePort</h4>
+<pre>public static int getSourcePort(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Gets the source port of a TCP packet.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet for which the source port is to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The source port of the <code>TcpPacket</code> encapsulated by <code>packet</code>.</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.lang.IllegalArgumentException</code> - if <code>packet</code> does not encapsulate a <code>TcpPacket</code>.</dd>
+</dl>
+</li>
+</ul>
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+<pre>public static int getDestinationPort(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Gets the destination port of a TCP packet.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet for which the destination port is to be extracted.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The destination port of the <code>TcpPacket</code> encapsulated by <code>packet</code>.</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.lang.IllegalArgumentException</code> - if <code>packet</code> does not encapsulate a <code>TcpPacket</code>.</dd>
+</dl>
+</li>
+</ul>
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+<pre>public static boolean isSource(org.pcap4j.core.PcapPacket packet,
+ java.lang.String ip,
+ int port)</pre>
+<div class="block">Helper method to determine if the given combination of IP and port matches the source of the given packet.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet to check.</dd>
+<dd><code>ip</code> - The IP to look for in the ip.src field of <code>packet</code>.</dd>
+<dd><code>port</code> - The port to look for in the tcp.port field of <code>packet</code>.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if the given ip+port match the corresponding fields in <code>packet</code>.</dd>
+</dl>
+</li>
+</ul>
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+<pre>public static boolean isDestination(org.pcap4j.core.PcapPacket packet,
+ java.lang.String ip,
+ int port)</pre>
+<div class="block">Helper method to determine if the given combination of IP and port matches the destination of the given packet.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet to check.</dd>
+<dd><code>ip</code> - The IP to look for in the ip.dst field of <code>packet</code>.</dd>
+<dd><code>port</code> - The port to look for in the tcp.dstport field of <code>packet</code>.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if the given ip+port match the corresponding fields in <code>packet</code>.</dd>
+</dl>
+</li>
+</ul>
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+<pre>public static boolean isSrcIpLocal(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Checks if the source IP address of the <code>IpV4Packet</code> contained in <code>packet</code> is a local address, i.e.,
+ if it pertains to subnet 10.0.0.0/8, 172.16.0.0/16, or 192.168.0.0/16.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet for which the source IP address is to be examined.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if <code>packet</code> wraps a <code>IpV4Packet</code> for which the source IP address is a local IP
+ address, <code>false</code> otherwise.</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.lang.NullPointerException</code> - if <code>packet</code> does not encapsulate an <code>IpV4Packet</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="isDstIpLocal-org.pcap4j.core.PcapPacket-">
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+<h4>isDstIpLocal</h4>
+<pre>public static boolean isDstIpLocal(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Checks if the destination IP address of the <code>IpV4Packet</code> contained in <code>packet</code> is a local address,
+ i.e., if it pertains to subnet 10.0.0.0/8, 172.16.0.0/16, or 192.168.0.0/16.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - The packet for which the destination IP address is to be examined.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> if <code>packet</code> wraps a <code>IpV4Packet</code> for which the destination IP address is a local
+ IP address, <code>false</code> otherwise.</dd>
+<dt><span class="throwsLabel">Throws:</span></dt>
+<dd><code>java.lang.NullPointerException</code> - if <code>packet</code> does not encapsulate an <code>IpV4Packet</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="isSyn-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isSyn</h4>
+<pre>public static boolean isSyn(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Checks if <code>packet</code> wraps a TCP packet that has the SYN flag set.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - A <code>PcapPacket</code> that is suspected to contain a <code>TcpPacket</code> for which the SYN flag is set.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> <em>iff</em> <code>packet</code> contains a <code>TcpPacket</code> for which the SYN flag is set,
+ <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="isAck-org.pcap4j.core.PcapPacket-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isAck</h4>
+<pre>public static boolean isAck(org.pcap4j.core.PcapPacket packet)</pre>
+<div class="block">Checks if <code>packet</code> wraps a TCP packet th at has the ACK flag set.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>packet</code> - A <code>PcapPacket</code> that is suspected to contain a <code>TcpPacket</code> for which the ACK flag is set.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd><code>true</code> <em>iff</em> <code>packet</code> contains a <code>TcpPacket</code> for which the ACK flag is set,
+ <code>false</code> otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="clusterToListOfPcapPackets-org.apache.commons.math3.stat.clustering.Cluster-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>clusterToListOfPcapPackets</h4>
+<pre>public static java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> clusterToListOfPcapPackets(org.apache.commons.math3.stat.clustering.Cluster<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> cluster)</pre>
+<div class="block">Transform a <code>Cluster</code> of <code>PcapPacketPair</code> objects into a <code>List</code> of <code>List</code> of
+ <code>PcapPacket</code> objects.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>cluster</code> - A <code>Cluster</code> of <a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis"><code>PcapPacketPair</code></a> objects that needs to be transformed.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects as the result of the transformation.</dd>
+</dl>
+</li>
+</ul>
+<a name="concatSequences-java.util.List-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>concatSequences</h4>
+<pre>public static java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> concatSequences(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signatures,
+ java.util.List<<a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a>> conversations)</pre>
+<div class="block">Concatenate sequences in <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.
+ We cross-check these with <code>List</code> of <code>Conversation</code> objects to see
+ if two <code>List</code> of <code>PcapPacket</code> objects actually belong to the same <code>Conversation</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>signatures</code> - A <code>List</code> of <code>List</code> of <code>List</code> of
+ <code>PcapPacket</code> objects that needs to be checked and concatenated.</dd>
+<dd><code>conversations</code> - A <code>List</code> of <a href="../../../../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects as reference for concatenation.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>List</code> of <code>List</code> of <code>List</code> of
+ <code>PcapPacket</code> objects as the result of the concatenation.</dd>
+</dl>
+</li>
+</ul>
+<a name="sortSequences-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>sortSequences</h4>
+<pre>public static java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> sortSequences(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signatures)</pre>
+<div class="block">Sort the sequences in the <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.
+ The purpose of this is to sort the order of sequences in the sequence list. For detection purposes, we need
+ to know if one sequence occurs earlier/later in time with respect to the other sequences for more confidence
+ in detecting the occurrence of an event.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>signatures</code> - A <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects that needs sorting.
+ We assume that innermost <code>List</code> of <code>PcapPacket</code> objects have been sorted ascending
+ by timestamps. By the time we use this method, we should have sorted it when calling the
+ <code>clusterToListOfPcapPackets</code> method.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A sorted <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</dd>
+</dl>
+</li>
+</ul>
+<a name="printSignatures-java.util.List-java.io.PrintWriter-boolean-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>printSignatures</h4>
+<pre>public static void printSignatures(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signatures,
+ java.io.PrintWriter resultsWriter,
+ boolean printToOutput)</pre>
+<div class="block">Print signatures in <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>signatures</code> - A <code>List</code> of <code>List</code> of <code>List</code> of
+ <code>PcapPacket</code> objects that needs to be printed.</dd>
+<dd><code>resultsWriter</code> - PrintWriter object to write into log file.</dd>
+<dd><code>printToOutput</code> - Boolean to decide whether to print out to screen or just log file.</dd>
+</dl>
+</li>
+</ul>
+<a name="extractRangeCorePoints-java.util.List-double-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>extractRangeCorePoints</h4>
+<pre>public static java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> extractRangeCorePoints(java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> pairs,
+ double eps,
+ int minPts)</pre>
+<div class="block">Extract core point range in the form of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>pairs</code> - The pairs for core points extraction.</dd>
+<dd><code>eps</code> - Epsilon value for the DBSCAN algorithm.</dd>
+<dd><code>minPts</code> - minPts value for the DBSCAN algorithm.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects that contains core points range
+ in the first and second element.</dd>
+</dl>
+</li>
+</ul>
+<a name="isRangeBasedMatching-java.util.List-double-java.util.List...-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isRangeBasedMatching</h4>
+<pre>public static boolean isRangeBasedMatching(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signature,
+ double eps,
+ java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>>... otherSignatures)</pre>
+<div class="block">Test the conservativeness of the signatures (basically whether we want strict or range-based matching).
+ We go for a conservative approach (strict matching) when there is no range or there are ranges but the
+ ranges overlap across multiple signatures, e.g., ON and OFF signatures.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>signature</code> - The signature we want to check and overwrite if needed.</dd>
+<dd><code>eps</code> - Epsilon value for the DBSCAN algorithm.</dd>
+<dd><code>otherSignatures</code> - Other signatures we want to check against this signature.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A boolean that is True when range-based matching is used.</dd>
+</dl>
+</li>
+</ul>
+<a name="useRangeBasedMatching-java.util.List-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>useRangeBasedMatching</h4>
+<pre>public static java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> useRangeBasedMatching(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signature,
+ java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> corePointRange)</pre>
+<div class="block">Test the conservativeness of the signatures (basically whether we want strict or range-based matching).
+ We go for a conservative approach (strict matching) when there is no range or there are ranges but the
+ ranges overlap across multiple signatures, e.g., ON and OFF signatures.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>signature</code> - The signature we want to check and overwrite if needed.</dd>
+<dd><code>corePointRange</code> - The core points range of this signature.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A boolean that is True when range-based matching is used.</dd>
+</dl>
+</li>
+</ul>
+<a name="isConservativeChecking-java.util.List-java.util.List-double-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>isConservativeChecking</h4>
+<pre>public static boolean isConservativeChecking(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signature,
+ java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> otherSignature,
+ double eps)</pre>
+<div class="block">Check if there is any overlap between the signature stored in this class and another signature.
+ Conditions:
+ 1) If both signatures do not have any range, then we need to do conservative checking (return true).
+ 2) If both signatures have the same number of packets/packet lengths, then we check the range; if the
+ numbers of packets/packet lengths are different then we assume that there is no overlap.
+ 3) If there is any range in the signatures, then we need to check for overlap.
+ 4) If there is overlap for EVERY packet/packet length, then we return true (conservative checking);
+ otherwise false (range-based checking).</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>signature</code> - A <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects to be checked
+ for overlaps with the other signature.</dd>
+<dd><code>otherSignature</code> - A <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects to be checked
+ for overlaps with the signature.</dd>
+<dd><code>eps</code> - Epsilon value for the DBSCAN algorithm.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A boolean that is true if there is an overlap; false otherwise.</dd>
+</dl>
+</li>
+</ul>
+<a name="removeSequenceFromSignature-java.util.List-int-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>removeSequenceFromSignature</h4>
+<pre>public static void removeSequenceFromSignature(java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signatures,
+ int sequenceIndex)</pre>
+<div class="block">Remove a sequence in a signature object.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>signatures</code> - A <code>List</code> of <code>List</code> of <code>List</code> of
+ <code>PcapPacket</code> objects.</dd>
+<dd><code>sequenceIndex</code> - An index for a sequence that consists of {<code>List</code> of <code>List</code> of
+ <code>PcapPacket</code> objects.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:59 PDT 2019 -->
+<title>PrintUtils</title>
+<meta name="date" content="2019-03-28">
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+<div class="header">
+<div class="subTitle">edu.uci.iotproject.util</div>
+<h2 title="Class PrintUtils" class="title">Class PrintUtils</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.util.PrintUtils</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">PrintUtils</span>
+extends java.lang.Object</pre>
+<div class="block">Utility methods for generating (output) strings.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>static java.util.List<java.util.List<org.pcap4j.core.PcapPacket>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PrintUtils.html#deserializeClustersFromFile-java.lang.String-">deserializeClustersFromFile</a></span>(java.lang.String fileName)</code>
+<div class="block">Read the list of list of packet pairs <code>List<List<PcapPacket>></code> from a file.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>static java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PrintUtils.html#deserializeFromFile-java.lang.String-">deserializeFromFile</a></span>(java.lang.String fileName)</code>
+<div class="block">Read the list of list of packet pairs <code>List<List<List<PcapPacket>>></code> from a file.</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PrintUtils.html#serializeClustersIntoFile-java.lang.String-java.util.List-">serializeClustersIntoFile</a></span>(java.lang.String fileName,
+ java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> clusterPackets)</code>
+<div class="block">Write the list of list of packet pairs <code>List<List<PcapPacket>></code> into a file.</div>
+</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PrintUtils.html#serializeIntoFile-java.lang.String-java.util.List-">serializeIntoFile</a></span>(java.lang.String fileName,
+ java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signature)</code>
+<div class="block">Write the signature and cluster analysis <code>List<List<List<PcapPacket>>></code> into a file.</div>
+</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>static java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PrintUtils.html#toCsv-edu.uci.iotproject.analysis.PcapPacketPair-">toCsv</a></span>(<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a> packetPair)</code>
+<div class="block">Converts a <code>PcapPacketPair</code> into a CSV string containing the packet lengths of the two packets in the pair.</div>
+</td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>static java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PrintUtils.html#toCsv-edu.uci.iotproject.analysis.PcapPacketPair-edu.uci.iotproject.DnsMap-">toCsv</a></span>(<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a> packetPair,
+ <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> ipHostnameMappings)</code>
+<div class="block">Converts a <code>PcapPacketPair</code> into a CSV string containing the packet lengths of the two packets in the pair
+ followed by the source of each packet.</div>
+</td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>static java.lang.String</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/util/PrintUtils.html#toSummaryString-org.apache.commons.math3.stat.clustering.Cluster-">toSummaryString</a></span>(org.apache.commons.math3.stat.clustering.Cluster<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> cluster)</code>
+<div class="block">Generate a string that summarizes/describes <code>cluster</code>.</div>
+</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="serializeClustersIntoFile-java.lang.String-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>serializeClustersIntoFile</h4>
+<pre>public static void serializeClustersIntoFile(java.lang.String fileName,
+ java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> clusterPackets)</pre>
+<div class="block">Write the list of list of packet pairs <code>List<List<PcapPacket>></code> into a file.
+
+ After the DBSCAN algorithm derives the clusters from pairs, we save the signature in the form of list of
+ packet pairs. We harvest the pairs and transform them back into a list of PcapPacket objects.
+ We do not maintain the pairs in the form of <code>Cluster<PcapPacketPair></code> objects because there might be
+ a situation where we could combine multiple PcapPacketPair objects into a longer signature, i.e., a string of
+ PcapPacket objects and not just a pair.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>fileName</code> - The path of the file in <code>String</code>. We could leave this one <code>null</code> if we wanted the
+ default file name <code>SERIALIZABLE_FILE_PATH</code>.</dd>
+<dd><code>clusterPackets</code> - The <code>Cluster</code> objects in the form of list of <code>PcapPacket</code> objects.</dd>
+</dl>
+</li>
+</ul>
+<a name="serializeIntoFile-java.lang.String-java.util.List-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>serializeIntoFile</h4>
+<pre>public static void serializeIntoFile(java.lang.String fileName,
+ java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> signature)</pre>
+<div class="block">Write the signature and cluster analysis <code>List<List<List<PcapPacket>>></code> into a file.
+
+ After the DBSCAN algorithm derives the clusters from pairs, we save the signature and cluster analysis
+ in the form of list of packet pairs. We harvest the pairs and transform them back into a list of PcapPacket
+ objects.
+ We do not maintain the pairs in the form of <code>Cluster<PcapPacketPair></code> objects because there might be
+ a situation where we could combine multiple PcapPacketPair objects into a longer signature, i.e., a string of
+ PcapPacket objects and not just a pair.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>fileName</code> - The path of the file in <code>String</code>. We could leave this one <code>null</code> if we wanted the
+ default file name <code>SERIALIZABLE_FILE_PATH</code>.</dd>
+<dd><code>signature</code> - The <code>Cluster</code> objects in the form of list of <code>PcapPacket</code> objects.</dd>
+</dl>
+</li>
+</ul>
+<a name="deserializeClustersFromFile-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>deserializeClustersFromFile</h4>
+<pre>public static java.util.List<java.util.List<org.pcap4j.core.PcapPacket>> deserializeClustersFromFile(java.lang.String fileName)</pre>
+<div class="block">Read the list of list of packet pairs <code>List<List<PcapPacket>></code> from a file.
+
+ After the DBSCAN algorithm derives the clusters from pairs, we save the signature in the form of list of
+ packet pairs. We harvest the pairs and transform them back into a list of PcapPacket objects.
+ We do not maintain the pairs in the form of <code>Cluster<PcapPacketPair></code> objects because there might be
+ a situation where we could combine multiple PcapPacketPair objects into a longer signature, i.e., a string of
+ PcapPacket objects and not just a pair.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>fileName</code> - The path of the file in <code>String</code>. We could leave this one <code>null</code> if we wanted the
+ default file name <code>SERIALIZABLE_FILE_PATH</code>.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The list of list of <code>Cluster</code> objects (<code>List<List<PcapPacket>></code>) that is read from file.</dd>
+</dl>
+</li>
+</ul>
+<a name="deserializeFromFile-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>deserializeFromFile</h4>
+<pre>public static java.util.List<java.util.List<java.util.List<org.pcap4j.core.PcapPacket>>> deserializeFromFile(java.lang.String fileName)</pre>
+<div class="block">Read the list of list of packet pairs <code>List<List<List<PcapPacket>>></code> from a file.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>fileName</code> - The path of the file in <code>String</code>. We could leave this one <code>null</code> if we wanted the
+ default file name <code>SERIALIZABLE_FILE_PATH</code>.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The list of list of list of <code>Cluster</code> objects (<code>List<List<List<PcapPacket>>></code>)
+ that is read from file.</dd>
+</dl>
+</li>
+</ul>
+<a name="toCsv-edu.uci.iotproject.analysis.PcapPacketPair-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>toCsv</h4>
+<pre>public static java.lang.String toCsv(<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a> packetPair)</pre>
+<div class="block">Converts a <code>PcapPacketPair</code> into a CSV string containing the packet lengths of the two packets in the pair.
+
+ For example, the resulting string will be "123, 456" if the first packet of the pair has a length of 123 and the
+ second packet of the pair has a length of 456.
+
+ <b>Note:</b> if the <a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis"><code>PcapPacketPair</code></a> has no second element, 0 is printed as the length of the second packet
+ in the pair.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a CSV string containing the packet lengths of the two packets of the given <code>PcapPacketPair</code>.</dd>
+</dl>
+</li>
+</ul>
+<a name="toCsv-edu.uci.iotproject.analysis.PcapPacketPair-edu.uci.iotproject.DnsMap-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>toCsv</h4>
+<pre>public static java.lang.String toCsv(<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a> packetPair,
+ <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a> ipHostnameMappings)</pre>
+<div class="block">Converts a <code>PcapPacketPair</code> into a CSV string containing the packet lengths of the two packets in the pair
+ followed by the source of each packet. The source will be a (set of) hostname(s) if the source IP can be resolved
+ to a (set of) hostname(s) using the provided <a href="../../../../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><code>DnsMap</code></a>.
+
+ For example, the resulting string will be "123, 456, 192.168.1.42, domain.com" if the first packet of the pair
+ has a length of 123, the second packet of the pair has a length of 456, the first packet of the pair the pair has
+ a source IP of '192.168.1.42' that cannot be resolved to a hostname, and the second packet of the pair has an IP
+ that resolves to 'domain.com'.
+
+ <b>Note:</b> if the <a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis"><code>PcapPacketPair</code></a> has no second element, 0 is printed as the length of the second packet
+ in the pair, and null is printed for its source.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a CSV string containing the packet lengths of the two packets of the given <code>PcapPacketPair</code> as well
+ as their respective sources.</dd>
+</dl>
+</li>
+</ul>
+<a name="toSummaryString-org.apache.commons.math3.stat.clustering.Cluster-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>toSummaryString</h4>
+<pre>public static java.lang.String toSummaryString(org.apache.commons.math3.stat.clustering.Cluster<<a href="../../../../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a>> cluster)</pre>
+<div class="block">Generate a string that summarizes/describes <code>cluster</code>.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>cluster</code> - The <code>Cluster</code> to summarize/describe.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>A string that summarizes/describes <code>cluster</code>.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
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+<th class="colFirst" scope="col">Class</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></td>
+<td class="colLast">
+<div class="block">Utility methods for inspecting <code>PcapPacket</code> properties.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../../edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util">PrintUtils</a></td>
+<td class="colLast">
+<div class="block">Utility methods for generating (output) strings.</div>
+</td>
+</tr>
+</tbody>
+</table>
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+</a>
+<h2 class="title">A</h2>
+<dl>
+<dt><a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><span class="typeNameLink">AbstractClusterMatcher</span></a> - Class in <a href="../edu/uci/iotproject/detection/package-summary.html">edu.uci.iotproject.detection</a></dt>
+<dd>
+<div class="block">Base class for classes that search a traffic trace for sequences of packets that "belong to" a given cluster (in
+ other words, classes that attempt to classify traffic as pertaining to a given cluster).</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection"><span class="typeNameLink">AbstractSignatureDetector</span></a> - Class in <a href="../edu/uci/iotproject/detection/package-summary.html">edu.uci.iotproject.detection</a></dt>
+<dd>
+<div class="block">TODO add class documentation.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/AbstractSignatureDetector.html#AbstractSignatureDetector-java.util.List-">AbstractSignatureDetector(List<List<List<PcapPacket>>>)</a></span> - Constructor for class edu.uci.iotproject.detection.<a href="../edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection">AbstractSignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addFinPacket-org.pcap4j.core.PcapPacket-">addFinPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Adds a TCP FIN packet to the list of TCP FIN packets associated with this conversation.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#addFlowObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowObserver-">addFlowObserver(Layer2FlowObserver)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
+<dd>
+<div class="block">Register as an observer of this flow.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html#addObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">addObserver(ClusterMatcherObserver)</a></span> - Method in class edu.uci.iotproject.detection.<a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a></dt>
+<dd>
+<div class="block">Register for callbacks from this cluster matcher.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#addObserver-edu.uci.iotproject.detection.SignatureDetectorObserver-">addObserver(SignatureDetectorObserver)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#addObserver-edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver-">addObserver(Layer3SignatureDetector.SignatureDetectionObserver)</a></span> - Method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#addObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassemblerObserver-">addObserver(Layer2FlowReassemblerObserver)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#addPacket-org.pcap4j.core.PcapPacket-">addPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
+<dd>
+<div class="block">Add a packet to this flow.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addPacket-org.pcap4j.core.PcapPacket-boolean-">addPacket(PcapPacket, boolean)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Add a packet to the list of packets associated with this conversation.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addRstPacket-org.pcap4j.core.PcapPacket-">addRstPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Add a TCP segment for which the RST flag is set to this <code>Conversation</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addSynPacket-org.pcap4j.core.PcapPacket-">addSynPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Records a TCP SYN packet as pertaining to this conversation (adds it to the the internal list).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html#alignmentCost-T-T-">alignmentCost(T, T)</a></span> - Method in class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a></dt>
+<dd>
+<div class="block">Calculate the cost of aligning <code>item1</code> with <code>item2</code>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">AlignmentPricer</span></a><<a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a>> - Class in <a href="../edu/uci/iotproject/comparison/seqalignment/package-summary.html">edu.uci.iotproject.comparison.seqalignment</a></dt>
+<dd>
+<div class="block">Provides a generic implementation for the calculation of the cost of aligning two elements of a sequence as part of
+ the sequence alignment algorithm (the algorithm is implemented in <a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html#AlignmentPricer-java.util.function.ToIntBiFunction-java.util.function.ToIntFunction-">AlignmentPricer(ToIntBiFunction<T, T>, ToIntFunction<T>)</a></span> - Constructor for class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a></dt>
+<dd>
+<div class="block">Constructs a new <a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>AlignmentPricer</code></a>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#ameAlignedWithNameShouldBe2--">ameAlignedWithNameShouldBe2()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#attemptAcknowledgementOfFin-org.pcap4j.core.PcapPacket-">attemptAcknowledgementOfFin(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Attempt to ACK any FIN packets held by this conversation.</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:L">
+<!-- -->
+</a>
+<h2 class="title">L</h2>
+<dl>
+<dt><a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2AbstractMatcher</span></a> - Class in <a href="../edu/uci/iotproject/detection/layer2/package-summary.html">edu.uci.iotproject.detection.layer2</a></dt>
+<dd>
+<div class="block">Base class for layer 2 matchers (<code>Layer2SequenceMatcher</code> and <code>Layer2RangeMatcher</code>).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#Layer2AbstractMatcher-java.util.List-">Layer2AbstractMatcher(List<PcapPacket>)</a></span> - Constructor for class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></dt>
+<dd>
+<div class="block">Create a <code>Layer2AbstractMatcher</code>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2ClusterMatcher</span></a> - Class in <a href="../edu/uci/iotproject/detection/layer2/package-summary.html">edu.uci.iotproject.detection.layer2</a></dt>
+<dd>
+<div class="block">Attempts to detect members of a cluster (packet sequence mutations) in layer 2 flows.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html#Layer2ClusterMatcher-java.util.List-int-boolean-double-">Layer2ClusterMatcher(List<List<PcapPacket>>, int, boolean, double)</a></span> - Constructor for class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2ClusterMatcher</a></dt>
+<dd>
+<div class="block">Create a new <a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> that attempts to find occurrences of <code>cluster</code>'s members.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html#Layer2ClusterMatcher-java.util.List-java.util.function.Function-int-boolean-double-">Layer2ClusterMatcher(List<List<PcapPacket>>, Function<Layer2Flow, Boolean>, int, boolean, double)</a></span> - Constructor for class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2ClusterMatcher</a></dt>
+<dd>
+<div class="block">Create a new <a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><code>Layer2ClusterMatcher</code></a> that attempts to find occurrences of <code>cluster</code>'s members.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2Flow</span></a> - Class in <a href="../edu/uci/iotproject/trafficreassembly/layer2/package-summary.html">edu.uci.iotproject.trafficreassembly.layer2</a></dt>
+<dd>
+<div class="block">Models a layer 2 flow: groups packets exchanged between two specific endpoints (MAC addresses).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#Layer2Flow-org.pcap4j.util.MacAddress-org.pcap4j.util.MacAddress-">Layer2Flow(MacAddress, MacAddress)</a></span> - Constructor for class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2FlowObserver</span></a> - Interface in <a href="../edu/uci/iotproject/trafficreassembly/layer2/package-summary.html">edu.uci.iotproject.trafficreassembly.layer2</a></dt>
+<dd>
+<div class="block">Interface for observing a <a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2Flow</code></a>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2FlowReassembler</span></a> - Class in <a href="../edu/uci/iotproject/trafficreassembly/layer2/package-summary.html">edu.uci.iotproject.trafficreassembly.layer2</a></dt>
+<dd>
+<div class="block">Reassembles traffic flows at layer 2, i.e., for each combination of hosts, creates a list of packets exchanged
+ between said hosts.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#Layer2FlowReassembler--">Layer2FlowReassembler()</a></span> - Constructor for class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2FlowReassemblerObserver</span></a> - Interface in <a href="../edu/uci/iotproject/trafficreassembly/layer2/package-summary.html">edu.uci.iotproject.trafficreassembly.layer2</a></dt>
+<dd>
+<div class="block">For observing a <a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2RangeMatcher</span></a> - Class in <a href="../edu/uci/iotproject/detection/layer2/package-summary.html">edu.uci.iotproject.detection.layer2</a></dt>
+<dd>
+<div class="block">Attempts to detect the presence of a specific packet sequence in the set of packets provided through multiple calls
+ to <a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-"><code>Layer2RangeMatcher.matchPacket(PcapPacket)</code></a>, considering only layer 2 information.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#Layer2RangeMatcher-java.util.List-java.util.List-int-double-">Layer2RangeMatcher(List<PcapPacket>, List<PcapPacket>, int, double)</a></span> - Constructor for class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2RangeMatcher</a></dt>
+<dd>
+<div class="block">Create a <code>Layer2RangeMatcher</code>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2SequenceMatcher</span></a> - Class in <a href="../edu/uci/iotproject/detection/layer2/package-summary.html">edu.uci.iotproject.detection.layer2</a></dt>
+<dd>
+<div class="block">Attempts to detect the presence of a specific packet sequence in the set of packets provided through multiple calls
+ to <a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-"><code>Layer2SequenceMatcher.matchPacket(PcapPacket)</code></a>, considering only layer 2 information.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#Layer2SequenceMatcher-java.util.List-int-">Layer2SequenceMatcher(List<PcapPacket>, int)</a></span> - Constructor for class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SequenceMatcher</a></dt>
+<dd>
+<div class="block">Create a <code>Layer2SequenceMatcher</code>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2SignatureDetector</span></a> - Class in <a href="../edu/uci/iotproject/detection/layer2/package-summary.html">edu.uci.iotproject.detection.layer2</a></dt>
+<dd>
+<div class="block">Performs layer 2 signature detection.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#Layer2SignatureDetector-java.util.List-int-boolean-double-">Layer2SignatureDetector(List<List<List<PcapPacket>>>, int, boolean, double)</a></span> - Constructor for class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#Layer2SignatureDetector-java.util.List-java.util.List-int-boolean-double-">Layer2SignatureDetector(List<List<List<PcapPacket>>>, List<Function<Layer2Flow, Boolean>>, int, boolean, double)</a></span> - Constructor for class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><span class="typeNameLink">Layer3ClusterMatcher</span></a> - Class in <a href="../edu/uci/iotproject/detection/layer3/package-summary.html">edu.uci.iotproject.detection.layer3</a></dt>
+<dd>
+<div class="block">Searches a traffic trace for sequences of packets "belong to" a given cluster (in other words, attempts to classify
+ traffic as pertaining to a given cluster).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#Layer3ClusterMatcher-java.util.List-java.lang.String-int-boolean-double-edu.uci.iotproject.detection.ClusterMatcherObserver...-">Layer3ClusterMatcher(List<List<PcapPacket>>, String, int, boolean, double, ClusterMatcherObserver...)</a></span> - Constructor for class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3">Layer3ClusterMatcher</a></dt>
+<dd>
+<div class="block">Create a <a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><code>Layer3ClusterMatcher</code></a>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3"><span class="typeNameLink">Layer3SignatureDetector</span></a> - Class in <a href="../edu/uci/iotproject/detection/layer3/package-summary.html">edu.uci.iotproject.detection.layer3</a></dt>
+<dd>
+<div class="block">Detects an event signature that spans one or multiple TCP connections.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#Layer3SignatureDetector-java.util.List-java.lang.String-int-boolean-double-">Layer3SignatureDetector(List<List<List<PcapPacket>>>, String, int, boolean, double)</a></span> - Constructor for class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/io/LiveCapture.html" title="class in edu.uci.iotproject.io"><span class="typeNameLink">LiveCapture</span></a> - Class in <a href="../edu/uci/iotproject/io/package-summary.html">edu.uci.iotproject.io</a></dt>
+<dd>
+<div class="block">Utility methods for setting up a <a href="../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that reads live traffic from a network interface card.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/LiveCapture.html#LiveCapture--">LiveCapture()</a></span> - Constructor for class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/LiveCapture.html" title="class in edu.uci.iotproject.io">LiveCapture</a></dt>
+<dd> </dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:M">
+<!-- -->
+</a>
+<h2 class="title">M</h2>
+<dl>
+<dt><a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer"><span class="typeNameLink">MacLayerFlowPattern</span></a> - Class in <a href="../edu/uci/iotproject/maclayer/package-summary.html">edu.uci.iotproject.maclayer</a></dt>
+<dd>
+<div class="block">TODO create base class for FlowPattern and derive MacLayer, TCP/IP layer versions from that.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#MacLayerFlowPattern-java.lang.String-java.lang.String-java.util.List-">MacLayerFlowPattern(String, String, List<Integer>)</a></span> - Constructor for class edu.uci.iotproject.maclayer.<a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPattern</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html" title="class in edu.uci.iotproject.maclayer"><span class="typeNameLink">MacLayerFlowPatternFinder</span></a> - Class in <a href="../edu/uci/iotproject/maclayer/package-summary.html">edu.uci.iotproject.maclayer</a></dt>
+<dd>
+<div class="block">Performs a search for <a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject"><code>FlowPattern</code></a>
+ TODO: May want to create an abstract FlowPatternFinder and then derive MacLayer, TcpipLayer FlowPatternFinders from that one.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html#MacLayerFlowPatternFinder-org.pcap4j.core.PcapHandle-edu.uci.iotproject.maclayer.MacLayerFlowPattern-">MacLayerFlowPatternFinder(PcapHandle, MacLayerFlowPattern)</a></span> - Constructor for class edu.uci.iotproject.maclayer.<a href="../edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPatternFinder</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#main-java.lang.String:A-">main(String[])</a></span> - Static method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#main-java.lang.String:A-">main(String[])</a></span> - Static method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/evaluation/DetectionResultsAnalyzer.html#main-java.lang.String:A-">main(String[])</a></span> - Static method in class edu.uci.iotproject.evaluation.<a href="../edu/uci/iotproject/evaluation/DetectionResultsAnalyzer.html" title="class in edu.uci.iotproject.evaluation">DetectionResultsAnalyzer</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/evaluation/SanitySignatureGenerator.html#main-java.lang.String:A-">main(String[])</a></span> - Static method in class edu.uci.iotproject.evaluation.<a href="../edu/uci/iotproject/evaluation/SanitySignatureGenerator.html" title="class in edu.uci.iotproject.evaluation">SanitySignatureGenerator</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/LiveCapture.html#main-java.lang.String:A-">main(String[])</a></span> - Static method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/LiveCapture.html" title="class in edu.uci.iotproject.io">LiveCapture</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/SignatureGenerator.html#main-java.lang.String:A-">main(String[])</a></span> - Static method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/SignatureGenerator.html" title="class in edu.uci.iotproject">SignatureGenerator</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#mAlignedWithNameShouldBe6--">mAlignedWithNameShouldBe6()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-">matchPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></dt>
+<dd>
+<div class="block">See the implementer class for the following method.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-">matchPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2RangeMatcher</a></dt>
+<dd>
+<div class="block">Attempt to advance this <code>Layer2RangeMatcher</code> by matching <code>packet</code> against the packet that this
+ <code>Layer2RangeMatcher</code> expects as the next packet of the sequence it is searching for.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#matchPacket-org.pcap4j.core.PcapPacket-">matchPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SequenceMatcher</a></dt>
+<dd>
+<div class="block">Attempt to advance this <code>Layer2SequenceMatcher</code> by matching <code>packet</code> against the packet that this
+ <code>Layer2SequenceMatcher</code> expects as the next packet of the sequence it is searching for.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#meAlignedWithNameShouldBe4--">meAlignedWithNameShouldBe4()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#meanAlignedWithEmptyStringShouldBe8--">meanAlignedWithEmptyStringShouldBe8()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:N">
+<!-- -->
+</a>
+<h2 class="title">N</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#naemAlignedWithNameShouldBe4--">naemAlignedWithNameShouldBe4()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#nameAlignedWithNameShouldBe0--">nameAlignedWithNameShouldBe0()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+ if (location.href.indexOf('is-external=true') == -1) {
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+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
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+<!-- -->
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+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../overview-summary.html">Overview</a></li>
+<li>Package</li>
+<li>Class</li>
+<li><a href="../overview-tree.html">Tree</a></li>
+<li><a href="../deprecated-list.html">Deprecated</a></li>
+<li class="navBarCell1Rev">Index</li>
+<li><a href="../help-doc.html">Help</a></li>
+</ul>
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+<div class="subNav">
+<ul class="navList">
+<li><a href="index-12.html">Prev Letter</a></li>
+<li><a href="index-14.html">Next Letter</a></li>
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+<li><a href="index-13.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../allclasses-noframe.html">All Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:O">
+<!-- -->
+</a>
+<h2 class="title">O</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/ClusterMatcherObserver.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">onMatch(AbstractClusterMatcher, List<PcapPacket>)</a></span> - Method in interface edu.uci.iotproject.detection.<a href="../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a></dt>
+<dd>
+<div class="block">Callback that is invoked by an <a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a> whenever it detects traffic that matches an element
+ of its associated cluster.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">onMatch(AbstractClusterMatcher, List<PcapPacket>)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#onMatch-edu.uci.iotproject.detection.AbstractClusterMatcher-java.util.List-">onMatch(AbstractClusterMatcher, List<PcapPacket>)</a></span> - Method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html#onNewFlow-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassembler-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-">onNewFlow(Layer2FlowReassembler, Layer2Flow)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2ClusterMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html#onNewFlow-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassembler-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-">onNewFlow(Layer2FlowReassembler, Layer2Flow)</a></span> - Method in interface edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassemblerObserver</a></dt>
+<dd>
+<div class="block">Invoked when when a <a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><code>Layer2FlowReassembler</code></a> detects a new flow (i.e., when it encounters traffic between two
+ MAC addresses that has not previously communicated in the traffic trace).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html#onNewPacket-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-org.pcap4j.core.PcapPacket-">onNewPacket(Layer2Flow, PcapPacket)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2ClusterMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html#onNewPacket-edu.uci.iotproject.trafficreassembly.layer2.Layer2Flow-org.pcap4j.core.PcapPacket-">onNewPacket(Layer2Flow, PcapPacket)</a></span> - Method in interface edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowObserver</a></dt>
+<dd>
+<div class="block">Invoked when a new packet is added to the observed flow.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/SignatureDetectorObserver.html#onSignatureDetected-java.util.List-java.util.List-">onSignatureDetected(List<List<List<PcapPacket>>>, List<List<PcapPacket>>)</a></span> - Method in interface edu.uci.iotproject.detection.<a href="../edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection">SignatureDetectorObserver</a></dt>
+<dd>
+<div class="block">Invoked when the signature detector has detected the presence of a signature in the traffic that it's examining.</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
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+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
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+<!-- -->
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+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
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+<ul class="navList" title="Navigation">
+<li><a href="../overview-summary.html">Overview</a></li>
+<li>Package</li>
+<li>Class</li>
+<li><a href="../overview-tree.html">Tree</a></li>
+<li><a href="../deprecated-list.html">Deprecated</a></li>
+<li class="navBarCell1Rev">Index</li>
+<li><a href="../help-doc.html">Help</a></li>
+</ul>
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+<li><a href="index-14.html" target="_top">No Frames</a></li>
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+</ul>
+<div>
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+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:P">
+<!-- -->
+</a>
+<h2 class="title">P</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html#parseTriggerTimestamp-java.lang.String-boolean-">parseTriggerTimestamp(String, boolean)</a></span> - Method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html" title="class in edu.uci.iotproject.io">TriggerTimesFileReader</a></dt>
+<dd>
+<div class="block">Parses a timestamp string to an <code>Instant</code> (UTC).</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><span class="typeNameLink">PcapHandleReader</span></a> - Class in <a href="../edu/uci/iotproject/io/package-summary.html">edu.uci.iotproject.io</a></dt>
+<dd>
+<div class="block">Reads packets from a <code>PcapHandle</code> (online or offline) and delivers those packets that pass the test exercised
+ by the provided <a href="../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis"><code>PcapPacketFilter</code></a> onto the provided <code>PacketListener</code>s.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/PcapHandleReader.html#PcapHandleReader-org.pcap4j.core.PcapHandle-edu.uci.iotproject.analysis.PcapPacketFilter-org.pcap4j.core.PacketListener...-">PcapHandleReader(PcapHandle, PcapPacketFilter, PacketListener...)</a></span> - Constructor for class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io">PcapHandleReader</a></dt>
+<dd>
+<div class="block">Create a <code>PcapHandleReader</code>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis"><span class="typeNameLink">PcapPacketFilter</span></a> - Interface in <a href="../edu/uci/iotproject/analysis/package-summary.html">edu.uci.iotproject.analysis</a></dt>
+<dd>
+<div class="block">TODO add class documentation.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">PcapPacketPair</span></a> - Class in <a href="../edu/uci/iotproject/analysis/package-summary.html">edu.uci.iotproject.analysis</a></dt>
+<dd>
+<div class="block">
+ A simple wrapper for holding a pair of packets (e.g., a request and associated reply packet).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#PcapPacketPair-org.pcap4j.core.PcapPacket-org.pcap4j.core.PcapPacket-">PcapPacketPair(PcapPacket, PcapPacket)</a></span> - Constructor for class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util"><span class="typeNameLink">PcapPacketUtils</span></a> - Class in <a href="../edu/uci/iotproject/util/package-summary.html">edu.uci.iotproject.util</a></dt>
+<dd>
+<div class="block">Utility methods for inspecting <code>PcapPacket</code> properties.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#PcapPacketUtils--">PcapPacketUtils()</a></span> - Constructor for class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#performDetectionConservative--">performDetectionConservative()</a></span> - Method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3">Layer3ClusterMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#performDetectionRangeBased--">performDetectionRangeBased()</a></span> - Method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3">Layer3ClusterMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#performExtraction-org.pcap4j.core.PacketListener...-">performExtraction(PacketListener...)</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis">TriggerTrafficExtractor</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/PrintWriterUtils.html#print-java.lang.Object-java.io.PrintWriter-boolean-">print(Object, PrintWriter, boolean)</a></span> - Static method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/PrintWriterUtils.html" title="class in edu.uci.iotproject.io">PrintWriterUtils</a></dt>
+<dd>
+<div class="block">Invoke <code>PrintWriter.println(Object)</code> passing <code>line</code> as argument while also printing <code>line</code> to
+ standard output if <code>duplicateToStdOut</code> is <code>true</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/PrintWriterUtils.html#printEmptyLine-java.io.PrintWriter-boolean-">printEmptyLine(PrintWriter, boolean)</a></span> - Static method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/PrintWriterUtils.html" title="class in edu.uci.iotproject.io">PrintWriterUtils</a></dt>
+<dd>
+<div class="block">Make writer (and standard output, if <code>duplicateToStdOut</code> is <code>true</code>) print an empty line.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/PrintWriterUtils.html#println-java.lang.Object-java.io.PrintWriter-boolean-">println(Object, PrintWriter, boolean)</a></span> - Static method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/PrintWriterUtils.html" title="class in edu.uci.iotproject.io">PrintWriterUtils</a></dt>
+<dd>
+<div class="block">Invoke <code>PrintWriter.println(Object)</code> passing <code>line</code> as argument while also printing <code>line</code> to
+ standard output if <code>duplicateToStdOut</code> is <code>true</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#printSignatures-java.util.List-java.io.PrintWriter-boolean-">printSignatures(List<List<List<PcapPacket>>>, PrintWriter, boolean)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Print signatures in <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util"><span class="typeNameLink">PrintUtils</span></a> - Class in <a href="../edu/uci/iotproject/util/package-summary.html">edu.uci.iotproject.util</a></dt>
+<dd>
+<div class="block">Utility methods for generating (output) strings.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/io/PrintWriterUtils.html" title="class in edu.uci.iotproject.io"><span class="typeNameLink">PrintWriterUtils</span></a> - Class in <a href="../edu/uci/iotproject/io/package-summary.html">edu.uci.iotproject.io</a></dt>
+<dd>
+<div class="block">Utility methods for (jointly) printing to a <code>PrintWriter</code> (and standard output).</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<div>JavaScript is disabled on your browser.</div>
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+<li><a href="index-15.html" target="_top">No Frames</a></li>
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+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:R">
+<!-- -->
+</a>
+<h2 class="title">R</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/PcapHandleReader.html#readFromHandle--">readFromHandle()</a></span> - Method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io">PcapHandleReader</a></dt>
+<dd>
+<div class="block">Start reading (and filtering) packets from the provided <code>PcapHandle</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html#readTriggerTimes-java.lang.String-boolean-">readTriggerTimes(String, boolean)</a></span> - Method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html" title="class in edu.uci.iotproject.io">TriggerTimesFileReader</a></dt>
+<dd>
+<div class="block">Reads a file with trigger timestamps and parses the timestamps into <code>Instant</code>s using the rules specified
+ by <a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html#parseTriggerTimestamp-java.lang.String-boolean-"><code>TriggerTimesFileReader.parseTriggerTimestamp(String, boolean)</code></a>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#removeDuplicates-java.util.List-">removeDuplicates(List<UserAction>)</a></span> - Static method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></dt>
+<dd>
+<div class="block">Remove duplicates in <code>List</code> of <code>UserAction</code> objects.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#removeFlowObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowObserver-">removeFlowObserver(Layer2FlowObserver)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
+<dd>
+<div class="block">Deregister as an observer of this flow.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html#removeObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">removeObserver(ClusterMatcherObserver)</a></span> - Method in class edu.uci.iotproject.detection.<a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a></dt>
+<dd>
+<div class="block">Deregister for callbacks from this cluster matcher.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#removeObserver-edu.uci.iotproject.detection.SignatureDetectorObserver-">removeObserver(SignatureDetectorObserver)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#removeObserver-edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver-">removeObserver(Layer3SignatureDetector.SignatureDetectionObserver)</a></span> - Method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#removeObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassemblerObserver-">removeObserver(Layer2FlowReassemblerObserver)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#removeSequenceFromSignature-java.util.List-int-">removeSequenceFromSignature(List<List<List<PcapPacket>>>, int)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Remove a sequence in a signature object.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#returnConversation-java.util.List-java.util.List-">returnConversation(List<PcapPacket>, List<Conversation>)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Given a <code>List</code> of <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects, find one that has the given <code>List</code>
+ of <code>PcapPacket</code>.</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:S">
+<!-- -->
+</a>
+<h2 class="title">S</h2>
+<dl>
+<dt><a href="../edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">SampleIntegerAlignmentPricer</span></a> - Class in <a href="../edu/uci/iotproject/comparison/seqalignment/package-summary.html">edu.uci.iotproject.comparison.seqalignment</a></dt>
+<dd>
+<div class="block">A sample <a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>AlignmentPricer</code></a> for computing the cost of aligning integer values.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html#SampleIntegerAlignmentPricer--">SampleIntegerAlignmentPricer()</a></span> - Constructor for class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">SampleIntegerAlignmentPricer</a></dt>
+<dd>
+<div class="block">Constructs a new <a href="../edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SampleIntegerAlignmentPricer</code></a>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/evaluation/SanitySignatureGenerator.html" title="class in edu.uci.iotproject.evaluation"><span class="typeNameLink">SanitySignatureGenerator</span></a> - Class in <a href="../edu/uci/iotproject/evaluation/package-summary.html">edu.uci.iotproject.evaluation</a></dt>
+<dd>
+<div class="block">Hacky utility for producing a sanity signature for negative test sets.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/evaluation/SanitySignatureGenerator.html#SanitySignatureGenerator--">SanitySignatureGenerator()</a></span> - Constructor for class edu.uci.iotproject.evaluation.<a href="../edu/uci/iotproject/evaluation/SanitySignatureGenerator.html" title="class in edu.uci.iotproject.evaluation">SanitySignatureGenerator</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">SequenceAlignment</span></a><<a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="type parameter in SequenceAlignment">ALIGNMENT_UNIT</a>> - Class in <a href="../edu/uci/iotproject/comparison/seqalignment/package-summary.html">edu.uci.iotproject.comparison.seqalignment</a></dt>
+<dd>
+<div class="block">A generic implementation of the sequence alignment algorithm given in Kleinberg's and Tardos' "Algorithm Design".</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html#SequenceAlignment-edu.uci.iotproject.comparison.seqalignment.AlignmentPricer-">SequenceAlignment(AlignmentPricer<ALIGNMENT_UNIT>)</a></span> - Constructor for class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceAlignment</a></dt>
+<dd>
+<div class="block">Constructs a new <a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test"><span class="typeNameLink">SequenceAlignmentTest</span></a> - Class in <a href="../edu/uci/iotproject/test/package-summary.html">edu.uci.iotproject.test</a></dt>
+<dd>
+<div class="block">Tests the implementation of <a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#SequenceAlignmentTest--">SequenceAlignmentTest()</a></span> - Constructor for class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">SequenceExtraction</span></a> - Class in <a href="../edu/uci/iotproject/comparison/seqalignment/package-summary.html">edu.uci.iotproject.comparison.seqalignment</a></dt>
+<dd>
+<div class="block">TODO add class documentation.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#SequenceExtraction--">SequenceExtraction()</a></span> - Constructor for class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceExtraction</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#SequenceExtraction-edu.uci.iotproject.comparison.seqalignment.SequenceAlignment-">SequenceExtraction(SequenceAlignment<Integer>)</a></span> - Constructor for class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceExtraction</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PrintUtils.html#serializeClustersIntoFile-java.lang.String-java.util.List-">serializeClustersIntoFile(String, List<List<PcapPacket>>)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util">PrintUtils</a></dt>
+<dd>
+<div class="block">Write the list of list of packet pairs <code>List<List<PcapPacket>></code> into a file.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PrintUtils.html#serializeIntoFile-java.lang.String-java.util.List-">serializeIntoFile(String, List<List<List<PcapPacket>>>)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util">PrintUtils</a></dt>
+<dd>
+<div class="block">Write the signature and cluster analysis <code>List<List<List<PcapPacket>>></code> into a file.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#setDnsMap-edu.uci.iotproject.DnsMap-">setDnsMap(DnsMap)</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd>
+<div class="block">Set the <a href="../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><code>DnsMap</code></a> to be queried for hostnames mappings when performing IP/hostname-sensitive clustering.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.html#setTimestampFormatter-java.time.format.DateTimeFormatter-">setTimestampFormatter(DateTimeFormatter)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></dt>
+<dd>
+<div class="block">Sets the <code>DateTimeFormatter</code> used when outputting a user action as a string and parsing a user action from
+ a string.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketFilter.html#shouldIncludePacket-org.pcap4j.core.PcapPacket-">shouldIncludePacket(PcapPacket)</a></span> - Method in interface edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis">PcapPacketFilter</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#shouldIncludePacket-org.pcap4j.core.PcapPacket-">shouldIncludePacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis">TriggerTrafficExtractor</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection"><span class="typeNameLink">SignatureDetectorObserver</span></a> - Interface in <a href="../edu/uci/iotproject/detection/package-summary.html">edu.uci.iotproject.detection</a></dt>
+<dd>
+<div class="block">Used for registering for notifications from a signature detector.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/SignatureGenerator.html" title="class in edu.uci.iotproject"><span class="typeNameLink">SignatureGenerator</span></a> - Class in <a href="../edu/uci/iotproject/package-summary.html">edu.uci.iotproject</a></dt>
+<dd>
+<div class="block">This is a system that reads PCAP files to compare
+ patterns of DNS hostnames, packet sequences, and packet
+ lengths with training data to determine certain events
+ or actions for smart home devices.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/SignatureGenerator.html#SignatureGenerator--">SignatureGenerator()</a></span> - Constructor for class edu.uci.iotproject.<a href="../edu/uci/iotproject/SignatureGenerator.html" title="class in edu.uci.iotproject">SignatureGenerator</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#sortConversationList-java.util.List-">sortConversationList(List<Conversation>)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Given a list of <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects, sort them by timestamps.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#sortSequences-java.util.List-">sortSequences(List<List<List<PcapPacket>>>)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Sort the sequences in the <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/PcapHandleReader.html#stopReading--">stopReading()</a></span> - Method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io">PcapHandleReader</a></dt>
+<dd>
+<div class="block">Stop reading from the wrapped <code>PcapHandle</code>.</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:T">
+<!-- -->
+</a>
+<h2 class="title">T</h2>
+<dl>
+<dt><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">TcpConversationUtils</span></a> - Class in <a href="../edu/uci/iotproject/analysis/package-summary.html">edu.uci.iotproject.analysis</a></dt>
+<dd>
+<div class="block">Utility functions for analyzing and structuring (sets of) <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#TcpConversationUtils--">TcpConversationUtils()</a></span> - Constructor for class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis"><span class="typeNameLink">TcpConversationUtils.SignaturePosition</span></a> - Enum in <a href="../edu/uci/iotproject/analysis/package-summary.html">edu.uci.iotproject.analysis</a></dt>
+<dd>
+<div class="block">Identifies the adjacency type of the signature for merging.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">TcpReassembler</span></a> - Class in <a href="../edu/uci/iotproject/trafficreassembly/layer3/package-summary.html">edu.uci.iotproject.trafficreassembly.layer3</a></dt>
+<dd>
+<div class="block">Reassembles TCP conversations (streams).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html#TcpReassembler--">TcpReassembler()</a></span> - Constructor for class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">TcpReassembler</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html#toCompactString--">toCompactString()</a></span> - Method in enum edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a></dt>
+<dd>
+<div class="block">Get a compact string representation of this <code>Direction</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PrintUtils.html#toCsv-edu.uci.iotproject.analysis.PcapPacketPair-">toCsv(PcapPacketPair)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util">PrintUtils</a></dt>
+<dd>
+<div class="block">Converts a <code>PcapPacketPair</code> into a CSV string containing the packet lengths of the two packets in the pair.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PrintUtils.html#toCsv-edu.uci.iotproject.analysis.PcapPacketPair-edu.uci.iotproject.DnsMap-">toCsv(PcapPacketPair, DnsMap)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util">PrintUtils</a></dt>
+<dd>
+<div class="block">Converts a <code>PcapPacketPair</code> into a CSV string containing the packet lengths of the two packets in the pair
+ followed by the source of each packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#toString--">toString()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.html#toString--">toString()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#toString--">toString()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#toString--">toString()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PrintUtils.html#toSummaryString-org.apache.commons.math3.stat.clustering.Cluster-">toSummaryString(Cluster<PcapPacketPair>)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util">PrintUtils</a></dt>
+<dd>
+<div class="block">Generate a string that summarizes/describes <code>cluster</code>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">TrafficLabeler</span></a> - Class in <a href="../edu/uci/iotproject/analysis/package-summary.html">edu.uci.iotproject.analysis</a></dt>
+<dd>
+<div class="block">A <code>PacketListener</code> that marks network traffic as (potentially) related to a user's actions by comparing the
+ timestamp of each packet to the timestamps of the provided list of user actions.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TrafficLabeler.html#TrafficLabeler-java.util.List-">TrafficLabeler(List<UserAction>)</a></span> - Constructor for class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis">TrafficLabeler</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html" title="class in edu.uci.iotproject.io"><span class="typeNameLink">TriggerTimesFileReader</span></a> - Class in <a href="../edu/uci/iotproject/io/package-summary.html">edu.uci.iotproject.io</a></dt>
+<dd>
+<div class="block">Parses a file to obtain the timestamps at which the smart plug was toggled on/off.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html#TriggerTimesFileReader--">TriggerTimesFileReader()</a></span> - Constructor for class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html" title="class in edu.uci.iotproject.io">TriggerTimesFileReader</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">TriggerTrafficExtractor</span></a> - Class in <a href="../edu/uci/iotproject/analysis/package-summary.html">edu.uci.iotproject.analysis</a></dt>
+<dd>
+<div class="block">TODO add class documentation.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#TriggerTrafficExtractor-java.lang.String-java.util.List-java.lang.String-">TriggerTrafficExtractor(String, List<Instant>, String)</a></span> - Constructor for class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis">TriggerTrafficExtractor</a></dt>
+<dd> </dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<!-- -->
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:U">
+<!-- -->
+</a>
+<h2 class="title">U</h2>
+<dl>
+<dt><a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">UserAction</span></a> - Class in <a href="../edu/uci/iotproject/analysis/package-summary.html">edu.uci.iotproject.analysis</a></dt>
+<dd>
+<div class="block">Models a user's action, such as toggling the smart plug on/off at a given time.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.html#UserAction-edu.uci.iotproject.analysis.UserAction.Type-java.time.Instant-">UserAction(UserAction.Type, Instant)</a></span> - Constructor for class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis"><span class="typeNameLink">UserAction.Type</span></a> - Enum in <a href="../edu/uci/iotproject/analysis/package-summary.html">edu.uci.iotproject.analysis</a></dt>
+<dd>
+<div class="block">Enum for indicating what type of action the user performed.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#useRangeBasedMatching-java.util.List-java.util.List-">useRangeBasedMatching(List<List<List<PcapPacket>>>, List<List<List<PcapPacket>>>)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Test the conservativeness of the signatures (basically whether we want strict or range-based matching).</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+ //-->
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+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
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+<!-- ======== END OF BOTTOM NAVBAR ======= -->
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+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
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+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>V-Index</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
+<script type="text/javascript" src="../script.js"></script>
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+<script type="text/javascript"><!--
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+ if (location.href.indexOf('is-external=true') == -1) {
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+<div>JavaScript is disabled on your browser.</div>
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+<a name="skip.navbar.top">
+<!-- -->
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:V">
+<!-- -->
+</a>
+<h2 class="title">V</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/DnsMap.html#validateAndAddNewEntry-org.pcap4j.core.PcapPacket-">validateAndAddNewEntry(PcapPacket)</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a></dt>
+<dd>
+<div class="block">Checks DNS packet and build the map data structure that
+ maps IP addresses to DNS hostnames</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis">TcpConversationUtils.SignaturePosition</a></dt>
+<dd>
+<div class="block">Returns the enum constant of this type with the specified name.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.Type.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a></dt>
+<dd>
+<div class="block">Returns the enum constant of this type with the specified name.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a></dt>
+<dd>
+<div class="block">Returns the enum constant of this type with the specified name.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html#values--">values()</a></span> - Static method in enum edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis">TcpConversationUtils.SignaturePosition</a></dt>
+<dd>
+<div class="block">Returns an array containing the constants of this enum type, in
+the order they are declared.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.Type.html#values--">values()</a></span> - Static method in enum edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis">UserAction.Type</a></dt>
+<dd>
+<div class="block">Returns an array containing the constants of this enum type, in
+the order they are declared.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html#values--">values()</a></span> - Static method in enum edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3">Conversation.Direction</a></dt>
+<dd>
+<div class="block">Returns an array containing the constants of this enum type, in
+the order they are declared.</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:C">
+<!-- -->
+</a>
+<h2 class="title">C</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html#calculateAlignment-ALIGNMENT_UNIT:A-ALIGNMENT_UNIT:A-">calculateAlignment(ALIGNMENT_UNIT[], ALIGNMENT_UNIT[])</a></span> - Method in class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceAlignment</a></dt>
+<dd>
+<div class="block">Calculates the cost of aligning <code>sequence1</code> with <code>sequence2</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#centroidOf-java.util.Collection-">centroidOf(Collection<PcapPacketPair>)</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection"><span class="typeNameLink">ClusterMatcherObserver</span></a> - Interface in <a href="../edu/uci/iotproject/detection/package-summary.html">edu.uci.iotproject.detection</a></dt>
+<dd>
+<div class="block">Interface used by client code to register for receiving a notification whenever an <a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><code>AbstractClusterMatcher</code></a>
+ detects traffic that matches an element of its associated cluster.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#clusterToListOfPcapPackets-org.apache.commons.math3.stat.clustering.Cluster-">clusterToListOfPcapPackets(Cluster<PcapPacketPair>)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Transform a <code>Cluster</code> of <code>PcapPacketPair</code> objects into a <code>List</code> of <code>List</code> of
+ <code>PcapPacket</code> objects.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#concatSequences-java.util.List-java.util.List-">concatSequences(List<List<List<PcapPacket>>>, List<Conversation>)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Concatenate sequences in <code>List</code> of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">Conversation</span></a> - Class in <a href="../edu/uci/iotproject/trafficreassembly/layer3/package-summary.html">edu.uci.iotproject.trafficreassembly.layer3</a></dt>
+<dd>
+<div class="block">Models a (TCP) conversation/connection/session/flow (packet's belonging to the same session between a client and a
+ server).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#Conversation-java.lang.String-int-java.lang.String-int-">Conversation(String, int, String, int)</a></span> - Constructor for class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Constructs a new <code>Conversation</code>.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">Conversation.Direction</span></a> - Enum in <a href="../edu/uci/iotproject/trafficreassembly/layer3/package-summary.html">edu.uci.iotproject.trafficreassembly.layer3</a></dt>
+<dd>
+<div class="block">Utility enum for expressing the direction of a packet pertaining to this <code>Conversation</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketLengthFrequencies-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">countPacketLengthFrequencies(Conversation)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Given a <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, counts the frequencies of each unique packet length seen as part of the
+ <code>Conversation</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketLengthFrequencies-java.util.Collection-">countPacketLengthFrequencies(Collection<Conversation>)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Like <a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketLengthFrequencies-edu.uci.iotproject.trafficreassembly.layer3.Conversation-"><code>TcpConversationUtils.countPacketLengthFrequencies(Conversation)</code></a>, but counts packet length frequencies for a collection
+ of <code>Conversation</code>s, i.e., the frequency of a packet length becomes the total number of packets with that
+ length across <em>all</em> <code>Conversation</code>s in <code>conversations</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketPairFrequencies-java.util.Collection-">countPacketPairFrequencies(Collection<PcapPacketPair>)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketPairFrequenciesByHostname-java.util.Collection-edu.uci.iotproject.DnsMap-">countPacketPairFrequenciesByHostname(Collection<Conversation>, DnsMap)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#countPacketSequenceFrequencies-java.util.Collection-">countPacketSequenceFrequencies(Collection<Conversation>)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd> </dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html#ZONE_ID_BUDAPEST">ZONE_ID_BUDAPEST</a></span> - Static variable in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html" title="class in edu.uci.iotproject.io">TriggerTimesFileReader</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html#ZONE_ID_LOS_ANGELES">ZONE_ID_LOS_ANGELES</a></span> - Static variable in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/TriggerTimesFileReader.html" title="class in edu.uci.iotproject.io">TriggerTimesFileReader</a></dt>
+<dd> </dd>
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+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:D">
+<!-- -->
+</a>
+<h2 class="title">D</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PrintUtils.html#deserializeClustersFromFile-java.lang.String-">deserializeClustersFromFile(String)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util">PrintUtils</a></dt>
+<dd>
+<div class="block">Read the list of list of packet pairs <code>List<List<PcapPacket>></code> from a file.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PrintUtils.html#deserializeFromFile-java.lang.String-">deserializeFromFile(String)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util">PrintUtils</a></dt>
+<dd>
+<div class="block">Read the list of list of packet pairs <code>List<List<List<PcapPacket>>></code> from a file.</div>
+</dd>
+<dt><a href="../edu/uci/iotproject/evaluation/DetectionResultsAnalyzer.html" title="class in edu.uci.iotproject.evaluation"><span class="typeNameLink">DetectionResultsAnalyzer</span></a> - Class in <a href="../edu/uci/iotproject/evaluation/package-summary.html">edu.uci.iotproject.evaluation</a></dt>
+<dd>
+<div class="block">Utility for comparing detected events to logged (actual) events.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/evaluation/DetectionResultsAnalyzer.html#DetectionResultsAnalyzer--">DetectionResultsAnalyzer()</a></span> - Constructor for class edu.uci.iotproject.evaluation.<a href="../edu/uci/iotproject/evaluation/DetectionResultsAnalyzer.html" title="class in edu.uci.iotproject.evaluation">DetectionResultsAnalyzer</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#distanceFrom-edu.uci.iotproject.analysis.PcapPacketPair-">distanceFrom(PcapPacketPair)</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><span class="typeNameLink">DnsMap</span></a> - Class in <a href="../edu/uci/iotproject/package-summary.html">edu.uci.iotproject</a></dt>
+<dd>
+<div class="block">This is a class that does DNS mapping.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/DnsMap.html#DnsMap--">DnsMap()</a></span> - Constructor for class edu.uci.iotproject.<a href="../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a></dt>
+<dd> </dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+ if (location.href.indexOf('is-external=true') == -1) {
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+<div>JavaScript is disabled on your browser.</div>
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+<h2 class="title">E</h2>
+<dl>
+<dt><a href="../edu/uci/iotproject/package-summary.html">edu.uci.iotproject</a> - package edu.uci.iotproject</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/analysis/package-summary.html">edu.uci.iotproject.analysis</a> - package edu.uci.iotproject.analysis</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/comparison/seqalignment/package-summary.html">edu.uci.iotproject.comparison.seqalignment</a> - package edu.uci.iotproject.comparison.seqalignment</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/detection/package-summary.html">edu.uci.iotproject.detection</a> - package edu.uci.iotproject.detection</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/detection/layer2/package-summary.html">edu.uci.iotproject.detection.layer2</a> - package edu.uci.iotproject.detection.layer2</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/detection/layer3/package-summary.html">edu.uci.iotproject.detection.layer3</a> - package edu.uci.iotproject.detection.layer3</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/evaluation/package-summary.html">edu.uci.iotproject.evaluation</a> - package edu.uci.iotproject.evaluation</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/io/package-summary.html">edu.uci.iotproject.io</a> - package edu.uci.iotproject.io</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/maclayer/package-summary.html">edu.uci.iotproject.maclayer</a> - package edu.uci.iotproject.maclayer</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/test/package-summary.html">edu.uci.iotproject.test</a> - package edu.uci.iotproject.test</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer2/package-summary.html">edu.uci.iotproject.trafficreassembly.layer2</a> - package edu.uci.iotproject.trafficreassembly.layer2</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer3/package-summary.html">edu.uci.iotproject.trafficreassembly.layer3</a> - package edu.uci.iotproject.trafficreassembly.layer3</dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/util/package-summary.html">edu.uci.iotproject.util</a> - package edu.uci.iotproject.util</dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#emanAlignedWithNameShouldBe6--">emanAlignedWithNameShouldBe6()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.html#equals-java.lang.Object-">equals(Object)</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#equals-java.lang.Object-">equals(Object)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block"><em>Note:</em> currently, equality is determined based on pairwise equality of the elements of the four tuple
+ (<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mClientIp"><code>Conversation.mClientIp</code></a>, <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mClientPort"><code>Conversation.mClientPort</code></a>, <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mServerIp"><code>Conversation.mServerIp</code></a>, <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#mServerPort"><code>Conversation.mServerPort</code></a>) for <code>this</code> and
+ <code>obj</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#extract-java.util.List-">extract(List<Conversation>)</a></span> - Method in class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceExtraction</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#extractByTlsAppData-java.util.List-">extractByTlsAppData(List<Conversation>)</a></span> - Method in class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceExtraction</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">ExtractedSequence</span></a> - Class in <a href="../edu/uci/iotproject/comparison/seqalignment/package-summary.html">edu.uci.iotproject.comparison.seqalignment</a></dt>
+<dd>
+<div class="block">TODO add class documentation.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html#ExtractedSequence-edu.uci.iotproject.trafficreassembly.layer3.Conversation-int-boolean-">ExtractedSequence(Conversation, int, boolean)</a></span> - Constructor for class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment">ExtractedSequence</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#extractPacketPairs-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">extractPacketPairs(Conversation)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">
+ Given a <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its set of "packet pairs", i.e., pairs of request-reply packets.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#extractRangeCorePoints-java.util.List-double-int-">extractRangeCorePoints(List<List<PcapPacket>>, double, int)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Extract core point range in the form of <code>List</code> of <code>List</code> of <code>PcapPacket</code> objects.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#extractTlsAppDataPacketPairs-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">extractTlsAppDataPacketPairs(Conversation)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">
+ Given a <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its set of "packet pairs", i.e., pairs of request-reply packets.</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:F">
+<!-- -->
+</a>
+<h2 class="title">F</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#fameAlignedWithNameShouldBe1--">fameAlignedWithNameShouldBe1()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">FinAckPair</span></a> - Class in <a href="../edu/uci/iotproject/trafficreassembly/layer3/package-summary.html">edu.uci.iotproject.trafficreassembly.layer3</a></dt>
+<dd>
+<div class="block">Groups a FIN packet and its corresponding ACK packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#FinAckPair-org.pcap4j.core.PcapPacket-">FinAckPair(PcapPacket)</a></span> - Constructor for class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">FinAckPair</a></dt>
+<dd>
+<div class="block">Constructs a <code>FinAckPair</code> given a FIN packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#FinAckPair-org.pcap4j.core.PcapPacket-org.pcap4j.core.PcapPacket-">FinAckPair(PcapPacket, PcapPacket)</a></span> - Constructor for class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">FinAckPair</a></dt>
+<dd>
+<div class="block">Constructs a <code>FinAckPair</code> given a FIN and an ACK packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html#findFlowPattern--">findFlowPattern()</a></span> - Method in class edu.uci.iotproject.maclayer.<a href="../edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPatternFinder</a></dt>
+<dd> </dd>
+<dt><a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject"><span class="typeNameLink">FlowPattern</span></a> - Class in <a href="../edu/uci/iotproject/package-summary.html">edu.uci.iotproject</a></dt>
+<dd>
+<div class="block">TODO add class documentation.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/FlowPattern.html#FlowPattern-java.lang.String-java.lang.String-org.pcap4j.core.PcapHandle-">FlowPattern(String, String, PcapHandle)</a></span> - Constructor for class edu.uci.iotproject.<a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></dt>
+<dd>
+<div class="block">Constructor #1</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/FlowPattern.html#FlowPattern-java.lang.String-java.util.List-org.pcap4j.core.PcapHandle-">FlowPattern(String, List<String>, PcapHandle)</a></span> - Constructor for class edu.uci.iotproject.<a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></dt>
+<dd>
+<div class="block">Constructor #2</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/LiveCapture.html#fromCliNicSelection-org.pcap4j.core.PacketListener...-">fromCliNicSelection(PacketListener...)</a></span> - Static method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/LiveCapture.html" title="class in edu.uci.iotproject.io">LiveCapture</a></dt>
+<dd>
+<div class="block">Prompts the user to pick a Network Interface Card (NIC) for which live traffic is to be captured, then creates a
+ <a href="../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that is ready to start capturing live traffic from that NIC.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/LiveCapture.html#fromNic-org.pcap4j.core.PcapNetworkInterface-org.pcap4j.core.PacketListener...-">fromNic(PcapNetworkInterface, PacketListener...)</a></span> - Static method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/LiveCapture.html" title="class in edu.uci.iotproject.io">LiveCapture</a></dt>
+<dd>
+<div class="block">Creates a <a href="../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> that is ready to start capturing live traffic from the provided Network
+ Interface Card (NIC).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#fromPcapPacket-org.pcap4j.core.PcapPacket-boolean-">fromPcapPacket(PcapPacket, boolean)</a></span> - Static method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Factory method for creating a <code>Conversation</code> from a <code>PcapPacket</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.html#fromString-java.lang.String-">fromString(String)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></dt>
+<dd>
+<div class="block">Instantiates a <code>UserAction</code> from a string that obeys the format used in <a href="../edu/uci/iotproject/analysis/UserAction.html#toString--"><code>UserAction.toString()</code></a>.</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:G">
+<!-- -->
+</a>
+<h2 class="title">G</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html#getAlignmentAlgorithm--">getAlignmentAlgorithm()</a></span> - Method in class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment">SequenceExtraction</a></dt>
+<dd>
+<div class="block">Gets the <a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a> used to perform the sequence extraction.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#getCluster--">getCluster()</a></span> - Method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3">Layer3ClusterMatcher</a></dt>
+<dd>
+<div class="block">Get the cluster that describes the packet sequence that this <a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><code>Layer3ClusterMatcher</code></a> is searching for.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#getCorrespondingAckPacket--">getCorrespondingAckPacket()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">FinAckPair</a></dt>
+<dd>
+<div class="block">Get the corresponding ACK packet of this pair, if any.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#getDestinationIp-org.pcap4j.core.PcapPacket-">getDestinationIp(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Gets the destination IP (in decimal format) of an IPv4 packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#getDestinationPort-org.pcap4j.core.PcapPacket-">getDestinationPort(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Gets the destination port of a TCP packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getDirection-org.pcap4j.core.PcapPacket-">getDirection(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Determine the direction of <code>packet</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#getDnsMap--">getDnsMap()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd>
+<div class="block">Get the <a href="../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><code>DnsMap</code></a> that is queried for hostnames mappings when performing IP/hostname-sensitive clustering.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#getEndpoint1--">getEndpoint1()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
+<dd>
+<div class="block">Get the first endpoint of this flow.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#getEndpoint2--">getEndpoint2()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
+<dd>
+<div class="block">Get the second endpoint of this flow.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#getEthDstAddr-org.pcap4j.core.PcapPacket-">getEthDstAddr(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Gets the destination address of the Ethernet part of <code>packet</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#getEthSrcAddr-org.pcap4j.core.PcapPacket-">getEthSrcAddr(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Gets the source address of the Ethernet part of <code>packet</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getFinAckPairs--">getFinAckPairs()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Retrieves an unmodifiable view of the list of <a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>FinAckPair</code></a>s associated with this <code>Conversation</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#getFinPacket--">getFinPacket()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">FinAckPair</a></dt>
+<dd>
+<div class="block">Get the FIN packet of this pair.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#getFirst--">getFirst()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#getFlowForAddresses-org.pcap4j.util.MacAddress-org.pcap4j.util.MacAddress-">getFlowForAddresses(MacAddress, MacAddress)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a></dt>
+<dd>
+<div class="block">Get the traffic flow between two local endpoints (<code>MacAddress</code>es).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#getFlows--">getFlows()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a></dt>
+<dd>
+<div class="block">Get all traffic flows, i.e., a traffic flow for each unique pair of endpoints (MAC addresses).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/FlowPattern.html#getHostname--">getHostname()</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/FlowPattern.html#getHostnameList--">getHostnameList()</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></dt>
+<dd>
+<div class="block">Get the list of associated hostnames.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/DnsMap.html#getHostnamesForIp-java.lang.String-">getHostnamesForIp(String)</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledReassembledTcpTraffic--">getLabeledReassembledTcpTraffic()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis">TrafficLabeler</a></dt>
+<dd>
+<div class="block">Get the labeled traffic reassembled as TCP connections (<b>note:</b> <em>discards</em> all non-TCP traffic).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledReassembledTcpTraffic-edu.uci.iotproject.DnsMap-">getLabeledReassembledTcpTraffic(DnsMap)</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis">TrafficLabeler</a></dt>
+<dd>
+<div class="block">Like <a href="../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledReassembledTcpTraffic--"><code>TrafficLabeler.getLabeledReassembledTcpTraffic()</code></a>, but uses the provided <code>ipHostnameMappings</code> to group
+ <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s by hostname.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledTraffic--">getLabeledTraffic()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis">TrafficLabeler</a></dt>
+<dd>
+<div class="block">Get the labeled traffic.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledTraffic-java.util.function.Function-">getLabeledTraffic(Function<List<PcapPacket>, T>)</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis">TrafficLabeler</a></dt>
+<dd>
+<div class="block">Like <a href="../edu/uci/iotproject/analysis/TrafficLabeler.html#getLabeledTraffic--"><code>TrafficLabeler.getLabeledTraffic()</code></a>, but allows the caller to supply a mapping function that is applied to
+ the traffic associated with each <a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><code>UserAction</code></a> (the traffic label) before returning the labeled traffic.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getLastPacket--">getLastPacket()</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></dt>
+<dd>
+<div class="block">Utility for <code>getMatchedPackets().get(getMatchedPackets().size()-1)</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/FlowPattern.html#getLength--">getLength()</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></dt>
+<dd>
+<div class="block">Get the length of the List of <code>FlowPattern</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/FlowPattern.html#getLength-java.lang.String-">getLength(String)</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></dt>
+<dd>
+<div class="block">Get the length of the List of <code>FlowPattern</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#getLength--">getLength()</a></span> - Method in class edu.uci.iotproject.maclayer.<a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPattern</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#getMacPrefixRawBytes--">getMacPrefixRawBytes()</a></span> - Method in class edu.uci.iotproject.maclayer.<a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPattern</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getMatchedPackets--">getMatchedPackets()</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getMatchedPacketsCount--">getMatchedPacketsCount()</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html#getMaxAlignmentCost--">getMaxAlignmentCost()</a></span> - Method in class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment">ExtractedSequence</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#getPacketLengthSequence-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">getPacketLengthSequence(Conversation)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Given a <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its packet length sequence.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#getPacketLengthSequence--">getPacketLengthSequence()</a></span> - Method in class edu.uci.iotproject.maclayer.<a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPattern</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#getPacketLengthSequenceTlsAppDataOnly-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">getPacketLengthSequenceTlsAppDataOnly(Conversation)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Given a <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>, extract its packet length sequence, but only include packet lengths of those
+ packets that carry TLS Application Data.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/FlowPattern.html#getPacketOrder--">getPacketOrder()</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></dt>
+<dd>
+<div class="block">Get the sequence of packet lengths that defines this <code>FlowPattern</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/FlowPattern.html#getPacketOrder-java.lang.String-">getPacketOrder(String)</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></dt>
+<dd>
+<div class="block">Get the sequence of packet lengths based on input hostname.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#getPackets--">getPackets()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
+<dd>
+<div class="block">Get the packets pertaining to this flow.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getPackets--">getPackets()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Get a list of packets pertaining to this <code>Conversation</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#getPacketsIncludedCount--">getPacketsIncludedCount()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis">TriggerTrafficExtractor</a></dt>
+<dd>
+<div class="block">Return the number of extracted packets (i.e., packets selected for inclusion) as a result of the most recent call
+ to <a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#performExtraction-org.pcap4j.core.PacketListener...-"><code>TriggerTrafficExtractor.performExtraction(PacketListener...)</code></a>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/FlowPattern.html#getPatternId--">getPatternId()</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject">FlowPattern</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html#getPatternId--">getPatternId()</a></span> - Method in class edu.uci.iotproject.maclayer.<a href="../edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer">MacLayerFlowPattern</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html#getRepresentativeSequence--">getRepresentativeSequence()</a></span> - Method in class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment">ExtractedSequence</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getRstPackets--">getRstPackets()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Get the TCP segments pertaining to this <code>Conversation</code> for which it was detected that the RST flag is set.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#getSecond--">getSecond()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#getSourceIp-org.pcap4j.core.PcapPacket-">getSourceIp(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Gets the source IP (in decimal format) of an IPv4 packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#getSourcePort-org.pcap4j.core.PcapPacket-">getSourcePort(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Gets the source port of a TCP packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getSynPackets--">getSynPackets()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Get a list of SYN packets pertaining to this <code>Conversation</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#getTargetLowerBound--">getTargetLowerBound()</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2RangeMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#getTargetSequence--">getTargetSequence()</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SequenceMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html#getTargetSequencePacketCount--">getTargetSequencePacketCount()</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2AbstractMatcher</a></dt>
+<dd>
+<div class="block">See the implementer class for the following method.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#getTargetSequencePacketCount--">getTargetSequencePacketCount()</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2RangeMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html#getTargetSequencePacketCount--">getTargetSequencePacketCount()</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SequenceMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html#getTargetUpperBound--">getTargetUpperBound()</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2">Layer2RangeMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html#getTcpConversations--">getTcpConversations()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">TcpReassembler</a></dt>
+<dd>
+<div class="block">Get the reassembled TCP connections.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.html#getTimestamp--">getTimestamp()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></dt>
+<dd>
+<div class="block">Get the time at which the user performed this action.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getTlsApplicationDataPackets--">getTlsApplicationDataPackets()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">If this <code>Conversation</code> is backing a TLS session (i.e., if the value of <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isTls--"><code>Conversation.isTls()</code></a> is <code>true</code>),
+ get the packets labeled as TLS Application Data packets.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TrafficLabeler.html#getTotalPacketCount--">getTotalPacketCount()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis">TrafficLabeler</a></dt>
+<dd>
+<div class="block">Get the total number of packets labeled by this <code>TrafficLabeler</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.html#getType--">getType()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></dt>
+<dd>
+<div class="block">Get the specific type of action performed by the user.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TrafficLabeler.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis">TrafficLabeler</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3">Layer3ClusterMatcher</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/DnsMap.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html#gotPacket-org.pcap4j.core.PcapPacket-">gotPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">TcpReassembler</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#groupConversationsByHostname-java.util.Collection-edu.uci.iotproject.DnsMap-">groupConversationsByHostname(Collection<Conversation>, DnsMap)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Given a collection of TCP conversations and associated DNS mappings, groups the conversations by hostname.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#groupConversationsByPacketSequence-java.util.Collection-boolean-">groupConversationsByPacketSequence(Collection<Conversation>, boolean)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Given a <code>Collection</code> of <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s, builds a <code>Map</code> from <code>String</code> to <code>List</code>
+ of <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a>s such that each key is the <em>concatenation of the packet lengths of all payload packets
+ (i.e., the set of packets returned by <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#getPackets--"><code>Conversation.getPackets()</code></a>) separated by a delimiter</em> of any
+ <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> pointed to by that key.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#groupConversationsByTlsApplicationDataPacketSequence-java.util.Collection-">groupConversationsByTlsApplicationDataPacketSequence(Collection<Conversation>)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd> </dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:H">
+<!-- -->
+</a>
+<h2 class="title">H</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/UserAction.html#hashCode--">hashCode()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis">UserAction</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#hashCode--">hashCode()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/io/PcapHandleReader.html#hasTerminated--">hasTerminated()</a></span> - Method in class edu.uci.iotproject.io.<a href="../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io">PcapHandleReader</a></dt>
+<dd>
+<div class="block">Checks if this <a href="../edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><code>PcapHandleReader</code></a> has gracefully terminated, i.e., that the wrapped <code>PcapHandle</code> has
+ been closed.</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<!-- NewPage -->
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+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>I-Index</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
+<script type="text/javascript" src="../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="I-Index";
+ }
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+ catch(err) {
+ }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
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+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
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+<ul class="navList" title="Navigation">
+<li><a href="../overview-summary.html">Overview</a></li>
+<li>Package</li>
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+<li class="navBarCell1Rev">Index</li>
+<li><a href="../help-doc.html">Help</a></li>
+</ul>
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+<li><a href="index-8.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
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+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
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+ allClassesLink.style.display = "block";
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+ else {
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+ //-->
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+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> <a name="I:I">
+<!-- -->
+</a>
+<h2 class="title">I</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html#INCLUSION_WINDOW_MILLIS">INCLUSION_WINDOW_MILLIS</a></span> - Static variable in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis">TriggerTrafficExtractor</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#initialize--">initialize()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#isAck-org.pcap4j.core.PcapPacket-">isAck(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Checks if <code>packet</code> wraps a TCP packet th at has the ACK flag set.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#isAcknowledged--">isAcknowledged()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">FinAckPair</a></dt>
+<dd>
+<div class="block">Was the FIN in this <code>FinAckPair</code> acknowledged?</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#isConservativeChecking-java.util.List-java.util.List-double-">isConservativeChecking(List<List<List<PcapPacket>>>, List<List<List<PcapPacket>>>, double)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Check if there is any overlap between the signature stored in this class and another signature.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html#isCorrespondingAckPacket-org.pcap4j.core.PcapPacket-">isCorrespondingAckPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">FinAckPair</a></dt>
+<dd>
+<div class="block">Checks if a given packet is an ACK corresponding to the FIN packet in this <code>FinAckPair</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#isDestination-org.pcap4j.core.PcapPacket-java.lang.String-int-">isDestination(PcapPacket, String, int)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Helper method to determine if the given combination of IP and port matches the destination of the given packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#isDstIpLocal-org.pcap4j.core.PcapPacket-">isDstIpLocal(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Checks if the destination IP address of the <code>IpV4Packet</code> contained in <code>packet</code> is a local address,
+ i.e., if it pertains to subnet 10.0.0.0/8, 172.16.0.0/16, or 192.168.0.0/16.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#isFirstClient--">isFirstClient()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isGracefullyShutdown--">isGracefullyShutdown()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">Get if this <code>Conversation</code> is considered to have been gracefully shut down.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#isPartOfConversationAndAdjacent-java.util.List-java.util.List-edu.uci.iotproject.trafficreassembly.layer3.Conversation-">isPartOfConversationAndAdjacent(List<PcapPacket>, List<PcapPacket>, Conversation)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Given a <a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><code>Conversation</code></a> objects, check if <code>List</code> of <code>PcapPacket</code> is part of it and return the
+ adjacency label based on <code>SignaturePosition</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#isRangeBasedMatching-java.util.List-double-java.util.List...-">isRangeBasedMatching(List<List<List<PcapPacket>>>, double, List<List<List<PcapPacket>>>...)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Test the conservativeness of the signatures (basically whether we want strict or range-based matching).</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/DnsMap.html#isRelatedToCloudServer-java.lang.String-java.lang.String-">isRelatedToCloudServer(String, String)</a></span> - Method in class edu.uci.iotproject.<a href="../edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject">DnsMap</a></dt>
+<dd>
+<div class="block">Checks DNS packet and build the map data structure that
+ maps IP addresses to DNS hostnames</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isRetransmission-org.pcap4j.core.PcapPacket-">isRetransmission(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">
+ Determines if the TCP packet contained in <code>packet</code> is a retransmission of a previously seen (logged)
+ packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/PcapPacketPair.html#isSecondClient--">isSecondClient()</a></span> - Method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis">PcapPacketPair</a></dt>
+<dd> </dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#isSource-org.pcap4j.core.PcapPacket-java.lang.String-int-">isSource(PcapPacket, String, int)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Helper method to determine if the given combination of IP and port matches the source of the given packet.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#isSrcIpLocal-org.pcap4j.core.PcapPacket-">isSrcIpLocal(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Checks if the source IP address of the <code>IpV4Packet</code> contained in <code>packet</code> is a local address, i.e.,
+ if it pertains to subnet 10.0.0.0/8, 172.16.0.0/16, or 192.168.0.0/16.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#isSyn-org.pcap4j.core.PcapPacket-">isSyn(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Checks if <code>packet</code> wraps a TCP packet that has the SYN flag set.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/util/PcapPacketUtils.html#isTcp-org.pcap4j.core.PcapPacket-">isTcp(PcapPacket)</a></span> - Static method in class edu.uci.iotproject.util.<a href="../edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util">PcapPacketUtils</a></dt>
+<dd>
+<div class="block">Determines if a given <code>PcapPacket</code> wraps a <code>TcpPacket</code>.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#isTls--">isTls()</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
+<dd>
+<div class="block">
+ Is this <code>Conversation</code> a TLS session?</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html#isTlsPort-int-">isTlsPort(int)</a></span> - Static method in class edu.uci.iotproject.analysis.<a href="../edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis">TcpConversationUtils</a></dt>
+<dd>
+<div class="block">Check if a given port number is considered a TLS port.</div>
+</dd>
+</dl>
+<a href="index-1.html">A</a> <a href="index-2.html">C</a> <a href="index-3.html">D</a> <a href="index-4.html">E</a> <a href="index-5.html">F</a> <a href="index-6.html">G</a> <a href="index-7.html">H</a> <a href="index-8.html">I</a> <a href="index-9.html">K</a> <a href="index-10.html">L</a> <a href="index-11.html">M</a> <a href="index-12.html">N</a> <a href="index-13.html">O</a> <a href="index-14.html">P</a> <a href="index-15.html">R</a> <a href="index-16.html">S</a> <a href="index-17.html">T</a> <a href="index-18.html">U</a> <a href="index-19.html">V</a> <a href="index-20.html">Z</a> </div>
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+<dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#kleinbergExampleOptAlignmentCostShouldBe6--">kleinbergExampleOptAlignmentCostShouldBe6()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
+<dd> </dd>
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+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="edu/uci/iotproject/evaluation/package-summary.html">edu.uci.iotproject.evaluation</a></td>
+<td class="colLast"> </td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="edu/uci/iotproject/io/package-summary.html">edu.uci.iotproject.io</a></td>
+<td class="colLast"> </td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="edu/uci/iotproject/maclayer/package-summary.html">edu.uci.iotproject.maclayer</a></td>
+<td class="colLast"> </td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="edu/uci/iotproject/test/package-summary.html">edu.uci.iotproject.test</a></td>
+<td class="colLast"> </td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="edu/uci/iotproject/trafficreassembly/layer2/package-summary.html">edu.uci.iotproject.trafficreassembly.layer2</a></td>
+<td class="colLast"> </td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="edu/uci/iotproject/trafficreassembly/layer3/package-summary.html">edu.uci.iotproject.trafficreassembly.layer3</a></td>
+<td class="colLast"> </td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="edu/uci/iotproject/util/package-summary.html">edu.uci.iotproject.util</a></td>
+<td class="colLast"> </td>
+</tr>
+</tbody>
+</table>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li class="navBarCell1Rev">Overview</li>
+<li>Package</li>
+<li>Class</li>
+<li><a href="overview-tree.html">Tree</a></li>
+<li><a href="deprecated-list.html">Deprecated</a></li>
+<li><a href="index-files/index-1.html">Index</a></li>
+<li><a href="help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
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+</ul>
+<ul class="navList" id="allclasses_navbar_bottom">
+<li><a href="allclasses-noframe.html">All Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
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+ allClassesLink.style.display = "block";
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+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
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+</html>
--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:27:00 PDT 2019 -->
+<title>Class Hierarchy</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
+<script type="text/javascript" src="script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Class Hierarchy";
+ }
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+ catch(err) {
+ }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
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+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="overview-summary.html">Overview</a></li>
+<li>Package</li>
+<li>Class</li>
+<li class="navBarCell1Rev">Tree</li>
+<li><a href="deprecated-list.html">Deprecated</a></li>
+<li><a href="index-files/index-1.html">Index</a></li>
+<li><a href="help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li>Prev</li>
+<li>Next</li>
+</ul>
+<ul class="navList">
+<li><a href="index.html?overview-tree.html" target="_top">Frames</a></li>
+<li><a href="overview-tree.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="allclasses-noframe.html">All Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
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+ if(window==top) {
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+ //-->
+</script>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
+<h1 class="title">Hierarchy For All Packages</h1>
+<span class="packageHierarchyLabel">Package Hierarchies:</span>
+<ul class="horizontal">
+<li><a href="edu/uci/iotproject/package-tree.html">edu.uci.iotproject</a>, </li>
+<li><a href="edu/uci/iotproject/analysis/package-tree.html">edu.uci.iotproject.analysis</a>, </li>
+<li><a href="edu/uci/iotproject/comparison/seqalignment/package-tree.html">edu.uci.iotproject.comparison.seqalignment</a>, </li>
+<li><a href="edu/uci/iotproject/detection/package-tree.html">edu.uci.iotproject.detection</a>, </li>
+<li><a href="edu/uci/iotproject/detection/layer2/package-tree.html">edu.uci.iotproject.detection.layer2</a>, </li>
+<li><a href="edu/uci/iotproject/detection/layer3/package-tree.html">edu.uci.iotproject.detection.layer3</a>, </li>
+<li><a href="edu/uci/iotproject/evaluation/package-tree.html">edu.uci.iotproject.evaluation</a>, </li>
+<li><a href="edu/uci/iotproject/io/package-tree.html">edu.uci.iotproject.io</a>, </li>
+<li><a href="edu/uci/iotproject/maclayer/package-tree.html">edu.uci.iotproject.maclayer</a>, </li>
+<li><a href="edu/uci/iotproject/test/package-tree.html">edu.uci.iotproject.test</a>, </li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer2/package-tree.html">edu.uci.iotproject.trafficreassembly.layer2</a>, </li>
+<li><a href="edu/uci/iotproject/trafficreassembly/layer3/package-tree.html">edu.uci.iotproject.trafficreassembly.layer3</a>, </li>
+<li><a href="edu/uci/iotproject/util/package-tree.html">edu.uci.iotproject.util</a></li>
+</ul>
+</div>
+<div class="contentContainer">
+<h2 title="Class Hierarchy">Class Hierarchy</h2>
+<ul>
+<li type="circle">java.lang.Object
+<ul>
+<li type="circle">edu.uci.iotproject.detection.<a href="edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><span class="typeNameLink">AbstractClusterMatcher</span></a>
+<ul>
+<li type="circle">edu.uci.iotproject.detection.layer2.<a href="edu/uci/iotproject/detection/layer2/Layer2ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2ClusterMatcher</span></a> (implements edu.uci.iotproject.trafficreassembly.layer2.<a href="edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowObserver</a>, edu.uci.iotproject.trafficreassembly.layer2.<a href="edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassemblerObserver</a>)</li>
+<li type="circle">edu.uci.iotproject.detection.layer3.<a href="edu/uci/iotproject/detection/layer3/Layer3ClusterMatcher.html" title="class in edu.uci.iotproject.detection.layer3"><span class="typeNameLink">Layer3ClusterMatcher</span></a> (implements org.pcap4j.core.PacketListener)</li>
+</ul>
+</li>
+<li type="circle">edu.uci.iotproject.detection.<a href="edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection"><span class="typeNameLink">AbstractSignatureDetector</span></a> (implements edu.uci.iotproject.detection.<a href="edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a>)</li>
+<li type="circle">edu.uci.iotproject.comparison.seqalignment.<a href="edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">AlignmentPricer</span></a><T>
+<ul>
+<li type="circle">edu.uci.iotproject.comparison.seqalignment.<a href="edu/uci/iotproject/comparison/seqalignment/SampleIntegerAlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">SampleIntegerAlignmentPricer</span></a></li>
+</ul>
+</li>
+<li type="circle">edu.uci.iotproject.trafficreassembly.layer3.<a href="edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">Conversation</span></a></li>
+<li type="circle">edu.uci.iotproject.evaluation.<a href="edu/uci/iotproject/evaluation/DetectionResultsAnalyzer.html" title="class in edu.uci.iotproject.evaluation"><span class="typeNameLink">DetectionResultsAnalyzer</span></a></li>
+<li type="circle">edu.uci.iotproject.<a href="edu/uci/iotproject/DnsMap.html" title="class in edu.uci.iotproject"><span class="typeNameLink">DnsMap</span></a> (implements org.pcap4j.core.PacketListener)</li>
+<li type="circle">edu.uci.iotproject.comparison.seqalignment.<a href="edu/uci/iotproject/comparison/seqalignment/ExtractedSequence.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">ExtractedSequence</span></a></li>
+<li type="circle">edu.uci.iotproject.trafficreassembly.layer3.<a href="edu/uci/iotproject/trafficreassembly/layer3/FinAckPair.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">FinAckPair</span></a></li>
+<li type="circle">edu.uci.iotproject.<a href="edu/uci/iotproject/FlowPattern.html" title="class in edu.uci.iotproject"><span class="typeNameLink">FlowPattern</span></a></li>
+<li type="circle">edu.uci.iotproject.detection.layer2.<a href="edu/uci/iotproject/detection/layer2/Layer2AbstractMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2AbstractMatcher</span></a>
+<ul>
+<li type="circle">edu.uci.iotproject.detection.layer2.<a href="edu/uci/iotproject/detection/layer2/Layer2RangeMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2RangeMatcher</span></a></li>
+<li type="circle">edu.uci.iotproject.detection.layer2.<a href="edu/uci/iotproject/detection/layer2/Layer2SequenceMatcher.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2SequenceMatcher</span></a></li>
+</ul>
+</li>
+<li type="circle">edu.uci.iotproject.trafficreassembly.layer2.<a href="edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2Flow</span></a></li>
+<li type="circle">edu.uci.iotproject.trafficreassembly.layer2.<a href="edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2FlowReassembler</span></a> (implements org.pcap4j.core.PacketListener)</li>
+<li type="circle">edu.uci.iotproject.detection.layer2.<a href="edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2"><span class="typeNameLink">Layer2SignatureDetector</span></a> (implements edu.uci.iotproject.detection.<a href="edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a>, org.pcap4j.core.PacketListener)</li>
+<li type="circle">edu.uci.iotproject.detection.layer3.<a href="edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3"><span class="typeNameLink">Layer3SignatureDetector</span></a> (implements edu.uci.iotproject.detection.<a href="edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection">ClusterMatcherObserver</a>, org.pcap4j.core.PacketListener)</li>
+<li type="circle">edu.uci.iotproject.io.<a href="edu/uci/iotproject/io/LiveCapture.html" title="class in edu.uci.iotproject.io"><span class="typeNameLink">LiveCapture</span></a></li>
+<li type="circle">edu.uci.iotproject.maclayer.<a href="edu/uci/iotproject/maclayer/MacLayerFlowPattern.html" title="class in edu.uci.iotproject.maclayer"><span class="typeNameLink">MacLayerFlowPattern</span></a></li>
+<li type="circle">edu.uci.iotproject.maclayer.<a href="edu/uci/iotproject/maclayer/MacLayerFlowPatternFinder.html" title="class in edu.uci.iotproject.maclayer"><span class="typeNameLink">MacLayerFlowPatternFinder</span></a></li>
+<li type="circle">edu.uci.iotproject.io.<a href="edu/uci/iotproject/io/PcapHandleReader.html" title="class in edu.uci.iotproject.io"><span class="typeNameLink">PcapHandleReader</span></a></li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/PcapPacketPair.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">PcapPacketPair</span></a> (implements org.apache.commons.math3.stat.clustering.Clusterable<T>)</li>
+<li type="circle">edu.uci.iotproject.util.<a href="edu/uci/iotproject/util/PcapPacketUtils.html" title="class in edu.uci.iotproject.util"><span class="typeNameLink">PcapPacketUtils</span></a></li>
+<li type="circle">edu.uci.iotproject.util.<a href="edu/uci/iotproject/util/PrintUtils.html" title="class in edu.uci.iotproject.util"><span class="typeNameLink">PrintUtils</span></a></li>
+<li type="circle">edu.uci.iotproject.io.<a href="edu/uci/iotproject/io/PrintWriterUtils.html" title="class in edu.uci.iotproject.io"><span class="typeNameLink">PrintWriterUtils</span></a></li>
+<li type="circle">edu.uci.iotproject.evaluation.<a href="edu/uci/iotproject/evaluation/SanitySignatureGenerator.html" title="class in edu.uci.iotproject.evaluation"><span class="typeNameLink">SanitySignatureGenerator</span></a></li>
+<li type="circle">edu.uci.iotproject.comparison.seqalignment.<a href="edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">SequenceAlignment</span></a><ALIGNMENT_UNIT></li>
+<li type="circle">edu.uci.iotproject.test.<a href="edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test"><span class="typeNameLink">SequenceAlignmentTest</span></a></li>
+<li type="circle">edu.uci.iotproject.comparison.seqalignment.<a href="edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">SequenceExtraction</span></a></li>
+<li type="circle">edu.uci.iotproject.<a href="edu/uci/iotproject/SignatureGenerator.html" title="class in edu.uci.iotproject"><span class="typeNameLink">SignatureGenerator</span></a></li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/TcpConversationUtils.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">TcpConversationUtils</span></a></li>
+<li type="circle">edu.uci.iotproject.trafficreassembly.layer3.<a href="edu/uci/iotproject/trafficreassembly/layer3/TcpReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">TcpReassembler</span></a> (implements org.pcap4j.core.PacketListener)</li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/TrafficLabeler.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">TrafficLabeler</span></a> (implements org.pcap4j.core.PacketListener)</li>
+<li type="circle">edu.uci.iotproject.io.<a href="edu/uci/iotproject/io/TriggerTimesFileReader.html" title="class in edu.uci.iotproject.io"><span class="typeNameLink">TriggerTimesFileReader</span></a></li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/TriggerTrafficExtractor.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">TriggerTrafficExtractor</span></a> (implements edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis">PcapPacketFilter</a>)</li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/UserAction.html" title="class in edu.uci.iotproject.analysis"><span class="typeNameLink">UserAction</span></a></li>
+</ul>
+</li>
+</ul>
+<h2 title="Interface Hierarchy">Interface Hierarchy</h2>
+<ul>
+<li type="circle">edu.uci.iotproject.detection.<a href="edu/uci/iotproject/detection/ClusterMatcherObserver.html" title="interface in edu.uci.iotproject.detection"><span class="typeNameLink">ClusterMatcherObserver</span></a></li>
+<li type="circle">edu.uci.iotproject.trafficreassembly.layer2.<a href="edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2FlowObserver</span></a></li>
+<li type="circle">edu.uci.iotproject.trafficreassembly.layer2.<a href="edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassemblerObserver.html" title="interface in edu.uci.iotproject.trafficreassembly.layer2"><span class="typeNameLink">Layer2FlowReassemblerObserver</span></a></li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/PcapPacketFilter.html" title="interface in edu.uci.iotproject.analysis"><span class="typeNameLink">PcapPacketFilter</span></a></li>
+<li type="circle">edu.uci.iotproject.detection.<a href="edu/uci/iotproject/detection/SignatureDetectorObserver.html" title="interface in edu.uci.iotproject.detection"><span class="typeNameLink">SignatureDetectorObserver</span></a></li>
+</ul>
+<h2 title="Enum Hierarchy">Enum Hierarchy</h2>
+<ul>
+<li type="circle">java.lang.Object
+<ul>
+<li type="circle">java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
+<ul>
+<li type="circle">edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/TcpConversationUtils.SignaturePosition.html" title="enum in edu.uci.iotproject.analysis"><span class="typeNameLink">TcpConversationUtils.SignaturePosition</span></a></li>
+<li type="circle">edu.uci.iotproject.analysis.<a href="edu/uci/iotproject/analysis/UserAction.Type.html" title="enum in edu.uci.iotproject.analysis"><span class="typeNameLink">UserAction.Type</span></a></li>
+<li type="circle">edu.uci.iotproject.trafficreassembly.layer3.<a href="edu/uci/iotproject/trafficreassembly/layer3/Conversation.Direction.html" title="enum in edu.uci.iotproject.trafficreassembly.layer3"><span class="typeNameLink">Conversation.Direction</span></a></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="overview-summary.html">Overview</a></li>
+<li>Package</li>
+<li>Class</li>
+<li class="navBarCell1Rev">Tree</li>
+<li><a href="deprecated-list.html">Deprecated</a></li>
+<li><a href="index-files/index-1.html">Index</a></li>
+<li><a href="help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li>Prev</li>
+<li>Next</li>
+</ul>
+<ul class="navList">
+<li><a href="index.html?overview-tree.html" target="_top">Frames</a></li>
+<li><a href="overview-tree.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_bottom">
+<li><a href="allclasses-noframe.html">All Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
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+ allClassesLink.style.display = "block";
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+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
+</body>
+</html>
--- /dev/null
+edu.uci.iotproject
+edu.uci.iotproject.analysis
+edu.uci.iotproject.comparison.seqalignment
+edu.uci.iotproject.detection
+edu.uci.iotproject.detection.layer2
+edu.uci.iotproject.detection.layer3
+edu.uci.iotproject.evaluation
+edu.uci.iotproject.io
+edu.uci.iotproject.maclayer
+edu.uci.iotproject.test
+edu.uci.iotproject.trafficreassembly.layer2
+edu.uci.iotproject.trafficreassembly.layer3
+edu.uci.iotproject.util
--- /dev/null
+function show(type)
+{
+ count = 0;
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+ else {
+ sNode.className = tableTab;
+ spanNode.innerHTML = "<a href=\"javascript:show("+ value + ");\">" + tabs[value][1] + "</a>";
+ }
+ }
+}
--- /dev/null
+/* Javadoc style sheet */
+/*
+Overall document style
+*/
+
+@import url('resources/fonts/dejavu.css');
+
+body {
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+ font-size:14px;
+ margin:0;
+}
+a:link, a:visited {
+ text-decoration:none;
+ color:#4A6782;
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projects / pingpong.git / commitdiff