Adding sensitivity experiment.
[pingpong.git] / Code / Projects / SmartPlugDetector / src / main / java / edu / uci / iotproject / util / PcapPacketUtils.java
index ccd3d9ad4a89dde13172c5f2b824475d060913fa..067af93edd6acf435ab154480b0a1434d2a9fa02 100644 (file)
@@ -1,13 +1,15 @@
 package edu.uci.iotproject.util;
 
-import edu.uci.iotproject.Conversation;
+import edu.uci.iotproject.trafficreassembly.layer3.Conversation;
 import edu.uci.iotproject.analysis.PcapPacketPair;
 import edu.uci.iotproject.analysis.TcpConversationUtils;
 import edu.uci.iotproject.analysis.TriggerTrafficExtractor;
 import org.apache.commons.math3.stat.clustering.Cluster;
 import org.pcap4j.core.PcapPacket;
+import org.pcap4j.packet.EthernetPacket;
 import org.pcap4j.packet.IpV4Packet;
 import org.pcap4j.packet.TcpPacket;
+import org.pcap4j.util.MacAddress;
 
 import java.util.*;
 
@@ -26,6 +28,30 @@ public final class PcapPacketUtils {
      */
     private static final int SIGNATURE_MERGE_THRESHOLD = 5;
 
+    /**
+     * This is an overlap counter (we consider overlaps between signatures if it happens more than once)
+     */
+    private static int mOverlapCounter = 0;
+
+
+    /**
+     * Gets the source address of the Ethernet part of {@code packet}.
+     * @param packet The packet for which the Ethernet source address is to be extracted.
+     * @return The source address of the Ethernet part of {@code packet}.
+     */
+    public static MacAddress getEthSrcAddr(PcapPacket packet) {
+        return getEthernetPacketOrThrow(packet).getHeader().getSrcAddr();
+    }
+
+    /**
+     * Gets the destination address of the Ethernet part of {@code packet}.
+     * @param packet The packet for which the Ethernet destination address is to be extracted.
+     * @return The destination address of the Ethernet part of {@code packet}.
+     */
+    public static MacAddress getEthDstAddr(PcapPacket packet) {
+        return getEthernetPacketOrThrow(packet).getHeader().getDstAddr();
+    }
+
     /**
      * Determines if a given {@link PcapPacket} wraps a {@link TcpPacket}.
      * @param packet The {@link PcapPacket} to inspect.
@@ -92,7 +118,7 @@ public final class PcapPacketUtils {
      * @param port The port to look for in the tcp.port field of {@code packet}.
      * @return {@code true} if the given ip+port match the corresponding fields in {@code packet}.
      */
-    public static boolean isSource(PcapPacket packet, String ip, int port) {
+    public static boolean isSource(PcapPacket packet,         String ip, int port) {
         IpV4Packet ipPacket = Objects.requireNonNull(packet.get(IpV4Packet.class));
         // For now we only support TCP flows.
         TcpPacket tcpPacket = Objects.requireNonNull(packet.get(TcpPacket.class));
@@ -153,7 +179,7 @@ public final class PcapPacketUtils {
     }
 
     /**
-     * Checks if {@code packet} wraps a TCP packet that has the ACK flag set.
+     * Checks if {@code packet} wraps a TCP packet th        at has the ACK flag set.
      * @param packet A {@link PcapPacket} that is suspected to contain a {@link TcpPacket} for which the ACK flag is set.
      * @return {@code true} <em>iff</em> {@code packet} contains a {@code TcpPacket} for which the ACK flag is set,
      *         {@code false} otherwise.
@@ -183,7 +209,7 @@ public final class PcapPacketUtils {
             ppListOfList.add(ppList);
         }
         // Sort the list of lists based on the first packet's timestamp!
-        Collections.sort(ppListOfList, (p1, p2) -> p1.get(0).getTimestamp().compareTo(p2.get(0).getTimestamp()));
+        Collections.sort(ppListOfList, (p1, p2) -> p1.        get(0).getTimestamp().compareTo(p2.get(0).getTimestamp()));
         return ppListOfList;
     }
 
@@ -199,8 +225,12 @@ public final class PcapPacketUtils {
      */
     public static List<List<List<PcapPacket>>>
             mergeSignatures(List<List<List<PcapPacket>>> signatures, List<Conversation> conversations) {
-        // Make a copy first.
-        List<List<List<PcapPacket>>> copySignatures = new ArrayList<>(signatures);
+
+        // TODO: THIS IS NOT A DEEP COPY; IT BASICALLY CREATES A REFERENCE TO THE SAME LIST OBJECT
+        // List<List<List<PcapPacket>>> copySignatures = new ArrayList<>(signatures);
+        // Make a deep copy first.
+        List<List<List<PcapPacket>>> copySignatures = new ArrayList<>();
+        listDeepCopy(copySignatures, signatures);
         // Traverse and look into the pairs of signatures.
         for (int first = 0; first < signatures.size(); first++) {
             List<List<PcapPacket>> firstList = signatures.get(first);
@@ -241,6 +271,9 @@ public final class PcapPacketUtils {
                 if (secondList.size() < SIGNATURE_MERGE_THRESHOLD) {
                     // Prune the unsuccessfully merged signatures (i.e., these will have size() < maxSignatureEl).
                     final int maxNumOfEl = maxSignatureEl;
+                    // TODO: DOUBLE CHECK IF WE REALLY NEED TO PRUNE FAILED BINDINGS
+                    // TODO: SOMETIMES THE SEQUENCES ARE JUST INCOMPLETE
+                    // TODO: AND BOTH THE COMPLETE AND INCOMPLETE SEQUENCES ARE VALID SIGNATURES!
                     firstList.removeIf(el -> el.size() < maxNumOfEl);
                     // Remove the merged set of signatures when successful.
                     signatures.remove(secondList);
@@ -254,6 +287,28 @@ public final class PcapPacketUtils {
         return signatures;
     }
 
+    /**
+     * Deep copy to create an entirely new {@link List} of {@link List} of {@link List} of {@link PcapPacket} objects.
+     * @param destList A {@link List} of {@link List} of {@link List} of
+     *          {@link PcapPacket} objects that will be the final container of the deep copy
+     * @param sourceList A {@link List} of {@link List} of {@link List} of
+     *          {@link PcapPacket} objects that will be the source of the deep copy.
+     */
+    private static void listDeepCopy(List<List<List<PcapPacket>>> destList, List<List<List<PcapPacket>>> sourceList) {
+
+        for(List<List<PcapPacket>> llPcapPacket : sourceList) {
+            List<List<PcapPacket>> tmpListOfList = new ArrayList<>();
+            for(List<PcapPacket> lPcapPacket : llPcapPacket) {
+                List<PcapPacket> tmpList = new ArrayList<>();
+                for(PcapPacket pcapPacket : lPcapPacket) {
+                    tmpList.add(pcapPacket);
+                }
+                tmpListOfList.add(tmpList);
+            }
+            destList.add(tmpListOfList);
+        }
+    }
+
     /**
      * Sort the signatures in the {@code List} of {@code List} of {@code List} of {@code PcapPacket} objects.
      * The purpose of this is to sort the order of signatures in the signature list. For detection purposes, we need
@@ -268,9 +323,11 @@ public final class PcapPacketUtils {
     public static List<List<List<PcapPacket>>> sortSignatures(List<List<List<PcapPacket>>> signatures) {
         // TODO: This is the simplest solution!!! Might not cover all corner cases.
         // TODO: Sort the list of lists based on the first packet's timestamps!
-        //Collections.sort(signatures, (p1, p2) -> {
-        //    return p1.get(0).get(0).getTimestamp().compareTo(p2.get(0).get(0).getTimestamp());
-        //});
+//        Collections.sort(signatures, (p1, p2) -> {
+//            //return p1.get(0).get(0).getTimestamp().compareTo(p2.get(0).get(0).getTimestamp());
+//            int compare = p1.get(0).get(0).getTimestamp().compareTo(p2.get(0).get(0).getTimestamp());
+//            return compare;
+//        });
         // TODO: The following is a more complete solution that covers corner cases.
         // Sort the list of lists based on one-to-one comparison between timestamps of signatures on both lists.
         // This also takes into account the fact that the number of signatures in the two lists could be different.
@@ -289,14 +346,17 @@ public final class PcapPacketUtils {
                 if (Math.abs(timestamp1 - timestamp2) < TriggerTrafficExtractor.INCLUSION_WINDOW_MILLIS) {
                     // If these two are within INCLUSION_WINDOW_MILLIS window then compare!
                     compare = p1.get(count1).get(0).getTimestamp().compareTo(p2.get(count2).get(0).getTimestamp());
-                    if (comparePrev != 0) { // First time since it is 0
-                        if (Integer.signum(compare) != Integer.signum(comparePrev)) {
-                            // Throw an exception if the order of the two signatures is not consistent,
-                            // E.g., 111, 222, 333 in one occassion and 222, 333, 111 in the other.
-                            throw new Error("For some reason, the order of signatures are not always consistent!" +
-                                    "Returning the original data structure of signatures...");
-                        }
-                    }
+//                    if (comparePrev != 0) { // First time since it is 0
+//                        if (Integer.signum(compare) != Integer.signum(comparePrev)) {
+//                            // Throw an exception if the order of the two signatures is not consistent,
+//                            // E.g., 111, 222, 333 in one occassion and 222, 333, 111 in the other.
+//                            throw new Error("OVERLAP WARNING: " + "" +
+//                                    "Please remove one of the sequences: " +
+//                                    p1.get(0).get(0).length() + "... OR " +
+//                                    p2.get(0).get(0).length() + "...");
+//                        }
+//                    }
+                    overlapChecking(compare, comparePrev, p1.get(count1), p2.get(count2));
                     comparePrev = compare;
                     count1++;
                     count2++;
@@ -314,10 +374,50 @@ public final class PcapPacketUtils {
         return signatures;
     }
 
+    /**
+     * Checks for overlapping between two packet sequences.
+     * @param compare Current comparison value between packet sequences p1 and p2
+     * @param comparePrev Previous comparison value between packet sequences p1 and p2
+     * @param sequence1 The packet sequence ({@link List} of {@link PcapPacket} objects).
+     * @param sequence2 The packet sequence ({@link List} of {@link PcapPacket} objects).
+     */
+    private static void overlapChecking(int compare, int comparePrev, List<PcapPacket> sequence1, List<PcapPacket> sequence2) {
+
+        // Check if p1 occurs before p2 but both have same overlap
+        if (comparePrev != 0) { // First time since it is 0
+            if (Integer.signum(compare) != Integer.signum(comparePrev)) {
+                // Throw an exception if the order of the two signatures is not consistent,
+                // E.g., 111, 222, 333 in one occassion and 222, 333, 111 in the other.
+                throw new Error("OVERLAP WARNING: " + "" +
+                        "Two sequences have some overlap. Please remove one of the sequences: " +
+                        sequence1.get(0).length() + "... OR " +
+                        sequence2.get(0).length() + "...");
+            }
+        }
+        // Check if p1 is longer than p2 and p2 occurs during the occurrence of p1
+        int lastIndexOfSequence1 = sequence1.size() - 1;
+        int lastIndexOfSequence2 = sequence2.size() - 1;
+        int compareLast =
+                sequence1.get(lastIndexOfSequence1).getTimestamp().compareTo(sequence2.get(lastIndexOfSequence2).getTimestamp());
+        // Check the signs of compare and compareLast
+        if ((compare <= 0 && compareLast > 0) ||
+            (compareLast <= 0 && compare > 0)) {
+            mOverlapCounter++;
+            // TODO: Probably not the best approach but we consider overlap if it happens more than once
+            if (mOverlapCounter > 1) {
+                throw new Error("OVERLAP WARNING: " + "" +
+                        "One sequence is in the other. Please remove one of the sequences: " +
+                        sequence1.get(0).length() + "... OR " +
+                        sequence2.get(0).length() + "...");
+            }
+        }
+
+    }
+
     /**
      * Gets the {@link IpV4Packet} contained in {@code packet}, or throws a {@link NullPointerException} if
      * {@code packet} does not contain an {@link IpV4Packet}.
-     * @param packet A {@link PcapPacket} that is expected to contain a {@link IpV4Packet}.
+     * @param packet A {@link PcapPacket} that is expected to contain an {@link IpV4Packet}.
      * @return The {@link IpV4Packet} contained in {@code packet}.
      * @throws NullPointerException if {@code packet} does not encapsulate an {@link IpV4Packet}.
      */
@@ -325,6 +425,17 @@ public final class PcapPacketUtils {
         return Objects.requireNonNull(packet.get(IpV4Packet.class), "not an IPv4 packet");
     }
 
+    /**
+     * Gets the {@link EthernetPacket} contained in {@code packet}, or throws a {@link NullPointerException} if
+     * {@code packet} does not contain an {@link EthernetPacket}.
+     * @param packet A {@link PcapPacket} that is expected to contain an {@link EthernetPacket}.
+     * @return The {@link EthernetPacket} contained in {@code packet}.
+     * @throws NullPointerException if {@code packet} does not encapsulate an {@link EthernetPacket}.
+     */
+    private static final EthernetPacket getEthernetPacketOrThrow(PcapPacket packet) {
+        return Objects.requireNonNull(packet.get(EthernetPacket.class), "not an Ethernet packet");
+    }
+
     /**
      * Print signatures in {@code List} of {@code List} of {@code List} of {@code PcapPacket} objects.
      *
@@ -337,13 +448,15 @@ public final class PcapPacketUtils {
         int sequenceCounter = 0;
         for(List<List<PcapPacket>> listListPcapPacket : signatures) {
             // Iterate over every member of a cluster/sequence
-            System.out.print("====== SEQUENCE " + sequenceCounter++);
+            System.out.print("====== SEQUENCE " + ++sequenceCounter);
             System.out.println(" - " + listListPcapPacket.size() + " MEMBERS ======");
             for(List<PcapPacket> listPcapPacket : listListPcapPacket) {
                 // Print out packet lengths in a sequence
                 int packetCounter = 0;
                 for(PcapPacket pcapPacket : listPcapPacket) {
-                    System.out.print(pcapPacket.length());
+                    if(pcapPacket != null) {
+                        System.out.print(pcapPacket.length());
+                    }
                     if(packetCounter < listPcapPacket.size() - 1) {
                         System.out.print(" ");  // Provide space if not last packet
                     } else {
@@ -354,4 +467,18 @@ public final class PcapPacketUtils {
             }
         }
     }
+
+    /**
+     * Remove a sequence in a signature object.
+     *
+     * @param signatures A {@link List} of {@link List} of {@link List} of
+     *          {@link PcapPacket} objects.
+     * @param sequenceIndex An index for a sequence that consists of {{@link List} of {@link List} of
+     *          {@link PcapPacket} objects.
+     */
+    public static void removeSequenceFromSignature(List<List<List<PcapPacket>>> signatures, int sequenceIndex) {
+
+        // Sequence index starts from 0
+        signatures.remove(sequenceIndex);
+    }
 }