From a60327c3c9d0f6ad9365aa042162a6c042a62402 Mon Sep 17 00:00:00 2001
From: bdemsky <bdemsky@uci.edu>
Date: Thu, 15 Jun 2017 17:36:45 -0700
Subject: [PATCH] Configure Doxygen Better for C

---
 src/Doxyfile | 4 ++--
 src/Makefile | 9 ++++++---
 2 files changed, 8 insertions(+), 5 deletions(-)

diff --git a/src/Doxyfile b/src/Doxyfile
index 6229615..53da459 100644
--- a/src/Doxyfile
+++ b/src/Doxyfile
@@ -355,7 +355,7 @@ LOOKUP_CACHE_SIZE      = 0
 # Private class members and static file members will be hidden unless
 # the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
 
-EXTRACT_ALL            = NO
+EXTRACT_ALL            = YES
 
 # If the EXTRACT_PRIVATE tag is set to YES all private members of a class
 # will be included in the documentation.
@@ -686,7 +686,7 @@ FILE_PATTERNS          =
 # should be searched for input files as well. Possible values are YES and NO.
 # If left blank NO is used.
 
-RECURSIVE              = NO
+RECURSIVE              = YES
 
 # The EXCLUDE tag can be used to specify files and/or directories that should be
 # excluded from the INPUT source files. This way you can easily exclude a
diff --git a/src/Makefile b/src/Makefile
index 1358986..366cfd5 100644
--- a/src/Makefile
+++ b/src/Makefile
@@ -4,11 +4,13 @@ PHONY += directories
 MKDIR_P = mkdir -p
 OBJ_DIR = bin
 
-C_SOURCES := $(wildcard *.c) $(wildcard AST/*.c) $(wildcard Collections/*.c) $(wildcard Backend/*.c)
+C_SOURCES := $(wildcard *.c) $(wildcard AST/*.c) $(wildcard Collections/*.c) $(wildcard Backend/*.c) $(wildcard Encoders/*.c)
+
+HEADERS := $(wildcard *.h) $(wildcard AST/*.h) $(wildcard Collections/*.h) $(wildcard Backend/*.h) $(wildcard Encoders/*.h)
 
 OBJECTS := $(CPP_SOURCES:%.cc=$(OBJ_DIR)/%.o) $(C_SOURCES:%.c=$(OBJ_DIR)/%.o)
 
-CFLAGS += -IAST -ICollections -IBackend -I.
+CFLAGS += -IAST -ICollections -IBackend -I. -IEncoders
 LDFLAGS := -ldl -lrt -rdynamic
 SHARED := -shared
 
@@ -29,12 +31,13 @@ ${OBJ_DIR}:
 	${MKDIR_P} ${OBJ_DIR}/AST
 	${MKDIR_P} ${OBJ_DIR}/Collections
 	${MKDIR_P} ${OBJ_DIR}/Backend
+	${MKDIR_P} ${OBJ_DIR}/Encoders
 
 debug: CFLAGS += -DCONFIG_DEBUG
 debug: all
 
 PHONY += docs
-docs: *.c *.cc *.h
+docs: $(C_SOURCES) $(HEADERS)
 	doxygen
 
 $(LIB_SO): $(OBJECTS)
-- 
2.34.1