From dec8f35fb1a1be32cf0302a7a23194e8dbe09a7a Mon Sep 17 00:00:00 2001
From: Janus Varmarken <varmarken@gmail.com>
Date: Sat, 18 Aug 2018 23:54:36 -0700
Subject: [PATCH] SequenceExtraction.java: work in progress, ignore it.

---
 .../uci/iotproject/SequenceExtraction.java    | 55 +++++++++++++------
 1 file changed, 37 insertions(+), 18 deletions(-)

diff --git a/Code/Projects/SmartPlugDetector/src/main/java/edu/uci/iotproject/SequenceExtraction.java b/Code/Projects/SmartPlugDetector/src/main/java/edu/uci/iotproject/SequenceExtraction.java
index ddf8010..bb1e210 100644
--- a/Code/Projects/SmartPlugDetector/src/main/java/edu/uci/iotproject/SequenceExtraction.java
+++ b/Code/Projects/SmartPlugDetector/src/main/java/edu/uci/iotproject/SequenceExtraction.java
@@ -5,6 +5,7 @@ import edu.uci.iotproject.comparison.seqalignment.SequenceAlignment;
 import org.pcap4j.core.PcapPacket;
 
 import java.util.List;
+import java.util.Map;
 
 /**
  * TODO add class documentation.
@@ -26,25 +27,43 @@ public class SequenceExtraction {
         mAlignmentAlg = alignmentAlgorithm;
     }
 
-    /**
-     *
-     * @param convsForAction A set of {@link Conversation}s known to be associated with a single type of user action.
-     */
-    public void extract(List<Conversation> convsForAction) {
-        int maxDifference = 0;
-
-        for (int i = 0; i < convsForAction.size(); i++) {
-            for (int j = i+1; j < convsForAction.size(); i++) {
-                Integer[] sequence1 = getPacketLengthSequence(convsForAction.get(i));
-                Integer[] sequence2 = getPacketLengthSequence(convsForAction.get(j));
-                int alignmentCost = mAlignmentAlg.calculateAlignment(sequence1, sequence2);
-                if (alignmentCost > maxDifference) {
-                    maxDifference = alignmentCost;
-                }
-            }
-        }
+    // Initial
+//    /**
+//     *
+//     * @param convsForAction A set of {@link Conversation}s known to be associated with a single type of user action.
+//     */
+//    public void extract(List<Conversation> convsForAction) {
+//        int maxDifference = 0;
+//
+//        for (int i = 0; i < convsForAction.size(); i++) {
+//            for (int j = i+1; j < convsForAction.size(); i++) {
+//                Integer[] sequence1 = getPacketLengthSequence(convsForAction.get(i));
+//                Integer[] sequence2 = getPacketLengthSequence(convsForAction.get(j));
+//                int alignmentCost = mAlignmentAlg.calculateAlignment(sequence1, sequence2);
+//                if (alignmentCost > maxDifference) {
+//                    maxDifference = alignmentCost;
+//                }
+//            }
+//        }
+//
+//    }
 
-    }
+
+//    public void extract(Map<String, List<Conversation>> hostnameToConvs) {
+//        int maxDifference = 0;
+//
+//        for (int i = 0; i < convsForAction.size(); i++) {
+//            for (int j = i+1; j < convsForAction.size(); i++) {
+//                Integer[] sequence1 = getPacketLengthSequence(convsForAction.get(i));
+//                Integer[] sequence2 = getPacketLengthSequence(convsForAction.get(j));
+//                int alignmentCost = mAlignmentAlg.calculateAlignment(sequence1, sequence2);
+//                if (alignmentCost > maxDifference) {
+//                    maxDifference = alignmentCost;
+//                }
+//            }
+//        }
+//
+//    }
 
     private Integer[] getPacketLengthSequence(Conversation c) {
         List<PcapPacket> packets = c.getPackets();
-- 
2.34.1