Removing SmartPlugDetector.
[pingpong.git] / Code / Projects / SmartPlugDetector / src / main / java / edu / uci / iotproject / comparison / seqalignment / SequenceExtraction.java
diff --git a/Code/Projects/SmartPlugDetector/src/main/java/edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.java b/Code/Projects/SmartPlugDetector/src/main/java/edu/uci/iotproject/comparison/seqalignment/SequenceExtraction.java
deleted file mode 100644 (file)
index 6aaa318..0000000
+++ /dev/null
@@ -1,152 +0,0 @@
-package edu.uci.iotproject.comparison.seqalignment;
-
-import edu.uci.iotproject.trafficreassembly.layer3.Conversation;
-import edu.uci.iotproject.analysis.TcpConversationUtils;
-
-import java.util.List;
-import java.util.Map;
-import java.util.stream.Collectors;
-
-/**
- * TODO add class documentation.
- *
- * @author Janus Varmarken
- */
-public class SequenceExtraction {
-
-
-    private final SequenceAlignment<Integer> mAlignmentAlg;
-
-
-    public SequenceExtraction() {
-        mAlignmentAlg = new SequenceAlignment<>(new AlignmentPricer<>((i1,i2) -> Math.abs(i1-i2), i -> 10));
-    }
-
-
-    public SequenceExtraction(SequenceAlignment<Integer> alignmentAlgorithm) {
-        mAlignmentAlg = alignmentAlgorithm;
-    }
-
-    /**
-     * Gets the {@link SequenceAlignment} used to perform the sequence extraction.
-     * @return the {@link SequenceAlignment} used to perform the sequence extraction.
-     */
-    public SequenceAlignment<Integer> getAlignmentAlgorithm() {
-        return mAlignmentAlg;
-    }
-
-    // Initial
-//    /**
-//     *
-//     * @param convsForAction A set of {@link Conversation}s known to be associated with a single type of user action.
-//     */
-//    public void extract(List<Conversation> convsForAction) {
-//        int maxDifference = 0;
-//
-//        for (int i = 0; i < convsForAction.size(); i++) {
-//            for (int j = i+1; j < convsForAction.size(); i++) {
-//                Integer[] sequence1 = getPacketLengthSequence(convsForAction.get(i));
-//                Integer[] sequence2 = getPacketLengthSequence(convsForAction.get(j));
-//                int alignmentCost = mAlignmentAlg.calculateAlignment(sequence1, sequence2);
-//                if (alignmentCost > maxDifference) {
-//                    maxDifference = alignmentCost;
-//                }
-//            }
-//        }
-//
-//    }
-
-
-//    public void extract(Map<String, List<Conversation>> hostnameToConvs) {
-//        int maxDifference = 0;
-//
-//        for (int i = 0; i < convsForAction.size(); i++) {
-//            for (int j = i+1; j < convsForAction.size(); i++) {
-//                Integer[] sequence1 = getPacketLengthSequence(convsForAction.get(i));
-//                Integer[] sequence2 = getPacketLengthSequence(convsForAction.get(j));
-//                int alignmentCost = mAlignmentAlg.calculateAlignment(sequence1, sequence2);
-//                if (alignmentCost > maxDifference) {
-//                    maxDifference = alignmentCost;
-//                }
-//            }
-//        }
-//
-//    }
-
-    // Building signature from entire sequence
-    public ExtractedSequence extract(List<Conversation> convsForActionForHostname) {
-        // First group conversations by packet sequences.
-        // TODO: the introduction of SYN/SYNACK, FIN/FINACK and RST as part of the sequence ID may be undesirable here
-        // as it can potentially result in sequences that are equal in terms of payload packets to be considered
-        // different due to differences in how they are terminated.
-        Map<String, List<Conversation>> groupedBySequence =
-                TcpConversationUtils.groupConversationsByPacketSequence(convsForActionForHostname, false);
-
-        // Then get a hold of one of the conversations that gave rise to the most frequent sequence.
-        Conversation mostFrequentConv = null;
-        int maxFrequency = 0;
-        for (Map.Entry<String, List<Conversation>> seqMapEntry : groupedBySequence.entrySet()) {
-            if (seqMapEntry.getValue().size() > maxFrequency) {
-                // Found a more frequent sequence
-                maxFrequency = seqMapEntry.getValue().size();
-                // We just pick the first conversation as the representative conversation for this sequence type.
-                mostFrequentConv = seqMapEntry.getValue().get(0);
-            } else if (seqMapEntry.getValue().size() == maxFrequency) {
-                // This sequence has the same frequency as the max frequency seen so far.
-                // Break ties by choosing the longest sequence.
-                // First get an arbitrary representative of currently examined sequence; we just pick the first.
-                Conversation c = seqMapEntry.getValue().get(0);
-                mostFrequentConv = c.getPackets().size() > mostFrequentConv.getPackets().size() ? c : mostFrequentConv;
-            }
-        }
-        // Now find the maximum cost of aligning the most frequent (or, alternatively longest) conversation with the
-        // each of the rest of the conversations also associated with this action and hostname.
-        int maxCost = 0;
-        final Integer[] mostFrequentConvSeq = TcpConversationUtils.getPacketLengthSequence(mostFrequentConv);
-        for (Conversation c : convsForActionForHostname) {
-            if (c == mostFrequentConv) {
-                // Don't compute distance to self.
-                continue;
-            }
-            Integer[] cSeq = TcpConversationUtils.getPacketLengthSequence(c);
-            int alignmentCost = mAlignmentAlg.calculateAlignment(mostFrequentConvSeq, cSeq);
-            if (alignmentCost > maxCost) {
-                maxCost = alignmentCost;
-            }
-        }
-        return new ExtractedSequence(mostFrequentConv, maxCost, false);
-    }
-
-    // Building signature from only TLS Application Data packets
-    public ExtractedSequence extractByTlsAppData(List<Conversation> convsForActionForHostname) {
-        // TODO: temporary hack to avoid 97-only conversations for dlink plug. We need some preprocessing/data cleaning.
-        convsForActionForHostname = convsForActionForHostname.stream().filter(c -> c.getTlsApplicationDataPackets().size() > 1).collect(Collectors.toList());
-
-        Map<String, List<Conversation>> groupedByTlsAppDataSequence =
-                TcpConversationUtils.groupConversationsByTlsApplicationDataPacketSequence(convsForActionForHostname);
-        // Get a Conversation representing the most frequent TLS application data sequence.
-        Conversation mostFrequentConv = groupedByTlsAppDataSequence.values().stream().max((l1, l2) -> {
-            // The frequency of a conversation with a specific packet sequence is the list size as that represents how
-            // many conversations exhibit that packet sequence.
-            // Hence, the difference between the list sizes can be used directly as the return value of the Comparator.
-            // Note: we break ties by choosing the one with the most TLS application data packets (i.e., the longest
-            // sequence) in case the frequencies are equal.
-            int diff = l1.size() - l2.size();
-            return diff != 0 ? diff : l1.get(0).getTlsApplicationDataPackets().size() - l2.get(0).getTlsApplicationDataPackets().size();
-        }).get().get(0); // Just pick the first as a representative of the most frequent sequence.
-        // Lengths of TLS Application Data packets in the most frequent (or most frequent and longest) conversation.
-        Integer[] mostFreqSeq = TcpConversationUtils.getPacketLengthSequenceTlsAppDataOnly(mostFrequentConv);
-        // Now find the maximum cost of aligning the most frequent (or, alternatively longest) conversation with the
-        // each of the rest of the conversations also associated with this action and hostname.
-        int maxCost = 0;
-        for (Conversation c : convsForActionForHostname) {
-            if (c == mostFrequentConv) continue;
-            int cost = mAlignmentAlg.calculateAlignment(mostFreqSeq, TcpConversationUtils.getPacketLengthSequenceTlsAppDataOnly(c));
-            maxCost = cost > maxCost ? cost : maxCost;
-        }
-        return new ExtractedSequence(mostFrequentConv, maxCost, true);
-        // Now find the maximum cost of aligning the most frequent (or, alternatively longest) conversation with the
-        // each of the rest of the conversations also associated with this action and hostname.
-    }
-
-}