--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_191) on Thu Mar 28 11:26:58 PDT 2019 -->
+<title>SequenceAlignmentTest</title>
+<meta name="date" content="2019-03-28">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="SequenceAlignmentTest";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li>Prev Class</li>
+<li>Next Class</li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../index.html?edu/uci/iotproject/test/SequenceAlignmentTest.html" target="_top">Frames</a></li>
+<li><a href="SequenceAlignmentTest.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../../allclasses-noframe.html">All Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">edu.uci.iotproject.test</div>
+<h2 title="Class SequenceAlignmentTest" class="title">Class SequenceAlignmentTest</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>edu.uci.iotproject.test.SequenceAlignmentTest</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">SequenceAlignmentTest</span>
+extends java.lang.Object</pre>
+<div class="block">Tests the implementation of <a href="../../../../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>.</div>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#SequenceAlignmentTest--">SequenceAlignmentTest</a></span>()</code> </td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#ameAlignedWithNameShouldBe2--">ameAlignedWithNameShouldBe2</a></span>()</code> </td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#emanAlignedWithNameShouldBe6--">emanAlignedWithNameShouldBe6</a></span>()</code> </td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#fameAlignedWithNameShouldBe1--">fameAlignedWithNameShouldBe1</a></span>()</code> </td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#initialize--">initialize</a></span>()</code> </td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#kleinbergExampleOptAlignmentCostShouldBe6--">kleinbergExampleOptAlignmentCostShouldBe6</a></span>()</code> </td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#mAlignedWithNameShouldBe6--">mAlignedWithNameShouldBe6</a></span>()</code> </td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#meAlignedWithNameShouldBe4--">meAlignedWithNameShouldBe4</a></span>()</code> </td>
+</tr>
+<tr id="i7" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#meanAlignedWithEmptyStringShouldBe8--">meanAlignedWithEmptyStringShouldBe8</a></span>()</code> </td>
+</tr>
+<tr id="i8" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#naemAlignedWithNameShouldBe4--">naemAlignedWithNameShouldBe4</a></span>()</code> </td>
+</tr>
+<tr id="i9" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../edu/uci/iotproject/test/SequenceAlignmentTest.html#nameAlignedWithNameShouldBe0--">nameAlignedWithNameShouldBe0</a></span>()</code> </td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="SequenceAlignmentTest--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>SequenceAlignmentTest</h4>
+<pre>public SequenceAlignmentTest()</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="initialize--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>initialize</h4>
+<pre>public void initialize()</pre>
+</li>
+</ul>
+<a name="kleinbergExampleOptAlignmentCostShouldBe6--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>kleinbergExampleOptAlignmentCostShouldBe6</h4>
+<pre>public void kleinbergExampleOptAlignmentCostShouldBe6()</pre>
+</li>
+</ul>
+<a name="meanAlignedWithEmptyStringShouldBe8--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>meanAlignedWithEmptyStringShouldBe8</h4>
+<pre>public void meanAlignedWithEmptyStringShouldBe8()</pre>
+</li>
+</ul>
+<a name="mAlignedWithNameShouldBe6--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>mAlignedWithNameShouldBe6</h4>
+<pre>public void mAlignedWithNameShouldBe6()</pre>
+</li>
+</ul>
+<a name="meAlignedWithNameShouldBe4--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>meAlignedWithNameShouldBe4</h4>
+<pre>public void meAlignedWithNameShouldBe4()</pre>
+</li>
+</ul>
+<a name="ameAlignedWithNameShouldBe2--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>ameAlignedWithNameShouldBe2</h4>
+<pre>public void ameAlignedWithNameShouldBe2()</pre>
+</li>
+</ul>
+<a name="fameAlignedWithNameShouldBe1--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>fameAlignedWithNameShouldBe1</h4>
+<pre>public void fameAlignedWithNameShouldBe1()</pre>
+</li>
+</ul>
+<a name="nameAlignedWithNameShouldBe0--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>nameAlignedWithNameShouldBe0</h4>
+<pre>public void nameAlignedWithNameShouldBe0()</pre>
+</li>
+</ul>
+<a name="emanAlignedWithNameShouldBe6--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>emanAlignedWithNameShouldBe6</h4>
+<pre>public void emanAlignedWithNameShouldBe6()</pre>
+</li>
+</ul>
+<a name="naemAlignedWithNameShouldBe4--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>naemAlignedWithNameShouldBe4</h4>
+<pre>public void naemAlignedWithNameShouldBe4()</pre>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li>Prev Class</li>
+<li>Next Class</li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../index.html?edu/uci/iotproject/test/SequenceAlignmentTest.html" target="_top">Frames</a></li>
+<li><a href="SequenceAlignmentTest.html" target="_top">No Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_bottom">
+<li><a href="../../../../allclasses-noframe.html">All Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_bottom");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary: </li>
+<li>Nested | </li>
+<li>Field | </li>
+<li><a href="#constructor.summary">Constr</a> | </li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail: </li>
+<li>Field | </li>
+<li><a href="#constructor.detail">Constr</a> | </li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
+</body>
+</html>
projects / pingpong.git / blobdiff